hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15583722/chunk_1/iprscan-20080501-15583722.nocrc
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Query sequence: KIAA0050
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00105                                                 180.9    1.3e-49   1
SM00233                                                  65.2    8.2e-15   1
SM00248                                                  39.9    3.5e-07   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     322   418 ..     1    82 []    65.2  8.2e-15
SM00105     1/1     461   583 ..     1   139 []   180.9  1.3e-49
SM00248     1/3     662   691 ..     1    30 []    17.1      2.5
SM00248     2/3     695   724 ..     1    30 []    16.0      5.2
SM00248     3/3     728   758 ..     1    30 []     6.7  5.9e+02

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 322 to 418: score 65.2, E = 8.2e-15
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      +++eG+L k+ ++ +++w +r+f++ +++L+y k+ +++    + +L
    KIAA0050   322    LVMEGHLFKRAsnaFkTWSRRWFTIQSNQLVYQKKYkdpVTVVVDDL 368  

                   sgcsvre.p......cFeivt.drtlllqAeseeereeWvealqsaiaka
                   + c+v+  p+++++ cFe+v+++++ llqA+se  ++ Wv+a qs ia+a
    KIAA0050   369 RLCTVKLcPdserrfCFEVVStSKSCLLQADSERLLQLWVSAVQSSIASA 418  

                   <-*
                      
    KIAA0050     -     -    

SM00105: domain 1 of 1, from 461 to 583: score 180.9, E = 1.3e-49
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                           +++s + gN+ C+DC   p P+WaS+nlGv+lCi+CSGiHRs
    KIAA0050   461    GHVVAQVQSVD-GNAQCCDCRE-PAPEWASINLGVTLCIQCSGIHRS 505  

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L GvH+SkV  RSltLD+W++ eL +l+ c++GN  +n+++e+ ++ ++ 
    KIAA0050   506 L-GVHFSKV--RSLTLDSWEP-ELVKLM-CELGNVIINQIYEARVEAMAV 550  

                   kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                   k+++++         +rq++e++i aKY+ek+f + k++  +   
    KIAA0050   551 KKPGPSC--------SRQEKEAWIHAKYVEKKF-LTKLPEIR    583  

SM00248: domain 1 of 3, from 662 to 691: score 17.1, E = 2.5
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d+ TpL  A + ++l  +++Ll++ga++n    
    KIAA0050   662    DNATPLIQATAANSLLACEFLLQNGANVNQ    691  

SM00248: domain 2 of 3, from 695 to 724: score 16.0, E = 5.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       Gr pLH+A   g+  ++ l+l++gad+ a   
    KIAA0050   695    AGRGPLHHATILGHTGLACLFLKRGADLGA    724  

SM00248: domain 3 of 3, from 728 to 758: score 6.7, E = 5.9e+02
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +Gr pL +A+e+ n ++v lL  ++ ++ +a   
    KIAA0050   728    EGRDPLTIAMETANADIVTLLRLAKMrEAEA    758  

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