hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15551349/chunk_1/iprscan-20080501-15551349.nocrc
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Query sequence: KIAA0048
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          98.7    1.6e-26   3
PF00096.16.fs Zinc finger, C2H2 type                          92.7      1e-24   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     539   563 ..     1    24 []    30.5  2.3e-06
PF00096.16.ls   1/3     539   563 ..     1    24 []    32.5  1.3e-06
PF00096.16.fs   2/3     569   593 ..     1    24 []    36.0    1e-07
PF00096.16.ls   2/3     569   593 ..     1    24 []    38.0    3e-08
PF00096.16.fs   3/3     599   621 ..     1    24 []    26.2  2.7e-05
PF00096.16.ls   3/3     599   621 ..     1    24 []    28.2  2.7e-05

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 539 to 563: score 30.5, E = 2.3e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+++dCgk+F+  s L++H r H   
    KIAA0048   539    HVCHIpDCGKTFRKTSLLRAHVRLH    563  

PF00096.16.ls: domain 1 of 3, from 539 to 563: score 32.5, E = 1.3e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+++dCgk+F+  s L++H r H   
    KIAA0048   539    HVCHIpDCGKTFRKTSLLRAHVRLH    563  

PF00096.16.fs: domain 2 of 3, from 569 to 593: score 36.0, E = 1e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++  Cgk+F+r+++L+rH rtH   
    KIAA0048   569    FVCNWfFCGKRFTRSDELQRHARTH    593  

PF00096.16.ls: domain 2 of 3, from 569 to 593: score 38.0, E = 3e-08
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++  Cgk+F+r+++L+rH rtH   
    KIAA0048   569    FVCNWfFCGKRFTRSDELQRHARTH    593  

PF00096.16.fs: domain 3 of 3, from 599 to 621: score 26.2, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F r+++L++H +tH   
    KIAA0048   599    FECA-QCQKRFMRSDHLTKHYKTH    621  

PF00096.16.ls: domain 3 of 3, from 599 to 621: score 28.2, E = 2.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F r+++L++H +tH   
    KIAA0048   599    FECA-QCQKRFMRSDHLTKHYKTH    621  

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