hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15501794/chunk_1/iprscan-20080501-15501794.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0045 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 385.5 7.5e-113 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 383.6 2.8e-112 1 PF02825.10.fs WWE domain 28.6 1.5e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02825.10.fs 1/2 762 797 .. 1 40 [. 22.6 7.3e-06 PF00632.15.fs 1/1 1649 2005 .] 1 351 [] 383.6 2.8e-112 PF00632.15.ls 1/1 1649 2005 .] 1 351 [] 385.5 7.5e-113 Alignments of top-scoring domains: PF02825.10.fs: domain 1 of 2, from 762 to 797: score 22.6, E = 7.3e-06 *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIE<-* ++ + + ++ +++ W+++ dd+g W+pY+ +sr IE KIAA0045 762 MLKKGNAQNT-DGAIWQWR---DDRGLWHPYNRIDSRIIE 797 PF00632.15.fs: domain 1 of 1, from 1649 to 2005: score 383.6, E = 2.8e-112 *->tLlsrelfnPdygLFeysddtdvne.........s...g.yaedsyt L+s+el++ d+gL++ e+ + +++++s+++ +y ++ + KIAA0045 1649 ALVSQELQRADLGLWRG-------EevtlsnpkgSqegTkYIQNLQG 1688 lqinPlssesnpeh....lkyFkFiGrilGlAlyngrlldvpFpraFYKk l+ P + p h + F+F+G+++++A++++rl+d+p+ ++FYK+ KIAA0045 1689 LFALPFGRTAKPAHiakvKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKW 1738 LLmkgkp..vtleDlesvDPelynSLkwllendgdrh.I........... +L + +++t +Dl ++DP++++S l ++ ++++++++++++++++ KIAA0045 1739 ML--RQEtsLTSHDLFDIDPVVARSVYHLEDIVRQKKrLeqdksqtkesl 1786 ......L.L.gsledveedLeLtFsveeessagfdpdasdfGetktveEL + ++L+ +g +++edL+L+F++ +++++e L KIAA0045 1787 qyaletLtMnG---CSVEDLGLDFTLP---------------GFPNIE-L 1817 kPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrkGFnevipsrlL k +G++IpVT++N++eY++L++ + Ln g+ +Qf+ Fr+GF +v+p++ L KIAA0045 1818 KKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHL 1867 slFdpeELelLicGsp..epiDvddLksnTeYkggYtedsplktIqwFWe ++F+peEL++L+cGs ++ +D + L + +++++gYt ds+ ++ ++e KIAA0045 1868 QYFYPEELDQLLCGSKadT-WDAKTLMECCRPDHGYTHDSR--AVKFLFE 1914 vveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppkFtIekv..g ++++f++e+++++LqFvTGs+R+P+gGF+ L+ p++tI++++ + KIAA0045 1915 ILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLN-------PPLTIVRKtfE 1957 .vggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteGFgle<- + + +dd+LP+++TC+N+L+LP+YsS Ei+rekLl+A +e+ ++F+l+ KIAA0045 1958 sTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 2005 * KIAA0045 - - PF00632.15.ls: domain 1 of 1, from 1649 to 2005: score 385.5, E = 7.5e-113 *->tLlsrelfnPdygLFeysddtdvne.........s...g.yaedsyt L+s+el++ d+gL++ e+ + +++++s+++ +y ++ + KIAA0045 1649 ALVSQELQRADLGLWRG-------EevtlsnpkgSqegTkYIQNLQG 1688 lqinPlssesnpeh....lkyFkFiGrilGlAlyngrlldvpFpraFYKk l+ P + p h + F+F+G+++++A++++rl+d+p+ ++FYK+ KIAA0045 1689 LFALPFGRTAKPAHiakvKMKFRFLGKLMAKAIMDFRLVDLPLGLPFYKW 1738 LLmkgkp..vtleDlesvDPelynSLkwllendgdrh.I........... +L + +++t +Dl ++DP++++S l ++ ++++++++++++++++ KIAA0045 1739 ML--RQEtsLTSHDLFDIDPVVARSVYHLEDIVRQKKrLeqdksqtkesl 1786 ......L.L.gsledveedLeLtFsveeessagfdpdasdfGetktveEL + ++L+ +g +++edL+L+F++ +++++e L KIAA0045 1787 qyaletLtMnG---CSVEDLGLDFTLP---------------GFPNIE-L 1817 kPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrkGFnevipsrlL k +G++IpVT++N++eY++L++ + Ln g+ +Qf+ Fr+GF +v+p++ L KIAA0045 1818 KKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHL 1867 slFdpeELelLicGsp..epiDvddLksnTeYkggYtedsplktIqwFWe ++F+peEL++L+cGs ++ +D + L + +++++gYt ds+ ++ ++e KIAA0045 1868 QYFYPEELDQLLCGSKadT-WDAKTLMECCRPDHGYTHDSR--AVKFLFE 1914 vveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppkFtIekv..g ++++f++e+++++LqFvTGs+R+P+gGF+ L+ p++tI++++ + KIAA0045 1915 ILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLN-------PPLTIVRKtfE 1957 .vggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteGFgle<- + + +dd+LP+++TC+N+L+LP+YsS Ei+rekLl+A +e+ ++F+l+ KIAA0045 1958 sTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 2005 * KIAA0045 - - //