hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15465348/chunk_1/iprscan-20080501-15465348.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0043 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00297 334.7 6.2e-96 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00297 1/2 37 147 .. 1 118 [] 168.4 7.2e-46 SM00297 2/2 313 422 .. 1 118 [] 166.3 3e-45 Alignments of top-scoring domains: SM00297: domain 1 of 2, from 37 to 147: score 168.4, E = 7.2e-46 *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv + ++ ++lq + +++++ l +h ++awpF++pvd+++L++ KIAA0043 37 PGRkTNQLQYMQNVVVKTLWKH--------QFAWPFYQPVDAIKLNL 75 PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds PDY++iIk+PMD++tIkk+len++Y+s+ e ++Dfn mf+N+++YN+p KIAA0043 76 PDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKPTD 125 evykdAkkLeklfeeklkelpp<-* ++ +A+ Lek f++k +++p+ KIAA0043 126 DIVLMAQALEKIFLQKVAQMPQ 147 SM00297: domain 2 of 2, from 313 to 422: score 166.3, E = 3e-45 *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv +++++++ ++l+++l+k++ +awpF++pvd+ L++ KIAA0043 313 LSEhLRYCDSILREMLSKKHAA---------YAWPFYKPVDAEALEL 350 PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds +DY+diIk+PMDL+t+k+k+++++Y +++ F+aD++LmfsN+++YN+pd+ KIAA0043 351 HDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDH 400 evykdAkkLeklfeeklkelpp<-* ev +A+kL+++fe +++++p+ KIAA0043 401 EVVAMARKLQDVFEMRFAKMPD 422 //