hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15451042/chunk_1/iprscan-20080501-15451042.nocrc
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Query sequence: KIAA0042
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 617.4   4.9e-181   1
SM00240                                                  48.9    6.6e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1     360   713 ..     1   404 []   617.4 4.9e-181
SM00240     1/1     828   880 ..     1    49 []    48.9  6.6e-10

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 360 to 713: score 617.4, E = 4.9e-181
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv...tvtvn....
                      +++++VavRv   RP++krEk ek    ++ vv ++++++tv+++++
    KIAA0042   360    NSQVTVAVRV---RPFTKREKIEK----ASQVVFMsgkEITVEhpdt 399  

                   .....FtFDkVFW.ryd.vddpsasQedVFeevaaPLvdsaldGYNvaTI
                   ++  +F +D +FW++ d++ +++asQ +V+e +aaPL++ a++G+N  ++
    KIAA0042   400 kqvynFIYDVSFWsF-DeCHPHYASQTTVYEKLAAPLLERAFEGFNT-CL 447  

                   FAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledlFeki
                   FAYGQTGSGK+yTM+G +               +epGiIPR +edlF ++
    KIAA0042   448 FAYGQTGSGKSYTMMGFS---------------EEPGIIPRFCEDLFSQV 482  

                   de.......fsVkvSylEIYNEkirDLLspspenSksrGkhakqsskkkL
                   +++++++ ++++++S++E+YNEki+DLL+ + en         +++k++L
    KIAA0042   483 ARkqtqevsYHIEMSFFEVYNEKIHDLLVCKDEN---------GQRKQPL 523  

                   rirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlellerGnk
                   r+rE++                +g+yV+ L++  VsS++++ ++le+Gnk
    KIAA0042   524 RVREHPV---------------YGPYVEALSMNIVSSYADIQSWLELGNK 558  

                   nRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegteqik
                   +R++aaT mN+ SSRSH++Ft++ +q+         kte  + e+ + ++
    KIAA0042   559 QRATAATGMNDKSSRSHSVFTLVMTQT---------KTEFVEGEEHDHRI 599  

                   sskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInALadd
                   +s++nL+DLAGSER+s +   ++GdRLkE+++INkSLl+LG+VI+AL++ 
    KIAA0042   600 TSRINLIDLAGSERCSTAH--TNGDRLKEGVSINKSLLTLGKVISALSE- 646  

                   shdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIanvSPs
                              qa+++s +IPYR+S+LT+LL++SLGGNsKT+MIa++SP+
    KIAA0042   647 -----------QANQRSVFIPYRESVLTWLLKESLGGNSKTAMIATISPA 685  

                   ssnyeETlsTLrFAsRaksIknkpavne<-*
                   +sn eETlsTLr+A+ a+ I+n ++vne   
    KIAA0042   686 ASNIEETLSTLRYANQARLIVNIAKVNE    713  

SM00240: domain 1 of 1, from 828 to 880: score 48.9, E = 6.6e-10
                   *->tvtiGRss....cdivlpspsiSRrHaeiv.dgd..yliDlgenSsN
                      t+t+G ++++++ di+l++ +i   H++i++ g++  +i++g   ++
    KIAA0042   828    TTTVGKYKpnssHDIQLSGVLIADDHCTIKnFGGtvSIIPVG---EA 871  

                   GTfVNgrrv<-*
                    T+VNg+++   
    KIAA0042   872 KTYVNGKHI    880  

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