hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15451042/chunk_1/iprscan-20080501-15451042.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0042 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 566.5 2.4e-167 1 PF00225.13.fs Kinesin motor domain 564.8 7.8e-167 1 PF00498.16.fs FHA domain 48.3 1.1e-13 1 PF00498.16.ls FHA domain 50.0 7.4e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.fs 1/1 368 706 .. 1 424 [] 564.8 7.8e-167 PF00225.13.ls 1/1 368 706 .. 1 424 [] 566.5 2.4e-167 PF00498.16.fs 1/1 829 895 .. 1 94 [] 48.3 1.1e-13 PF00498.16.ls 1/1 829 895 .. 1 94 [] 50.0 7.4e-12 Alignments of top-scoring domains: PF00225.13.fs: domain 1 of 1, from 368 to 706: score 564.8, E = 7.8e-167 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe RvRP+++rEk +++s+vv +s +++++ ++++ + F +D F++ KIAA0042 368 RVRPFTKREKIEKASQVVFMSGKEITVEHPDtKQVYNFIYDVSFWSF 414 atQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYT + ++p+YAsq +vye++a+pl+e ++eG+N ++FAYGQTGSGK+YT KIAA0042 415 DE----ChPhYASQTTVYEKLAAPLLERAFEGFNTCLFAYGQTGSGKSYT 460 MeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfK M+G eepGiiPR +edlF+++++ +++ KIAA0042 461 MMG-----------------FSEEPGIIPRFCEDLFSQVARKQTQ----- 488 PklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNE + ++++++S++E+YNE KIAA0042 489 ----------------------------------EVSYHIEMSFFEVYNE 504 kirDLLspsppqrgspskdnekkkkk.pLrireDpkrGgkmdgvyVkGLt ki+DLL+ + +e +++k+pLr+re+p +G +yV+ L+ KIAA0042 505 KIHDLLVCK----------DENGQRKqPLRVREHPVYG-----PYVEALS 539 eveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdt + V+s+ +++++LelGnk+R++a+T mN++SSRSH++Ft++ +q+ t+ KIAA0042 540 MNIVSSYADIQSWLELGNKQRATAATGMNDKSSRSHSVFTLVMTQTKTEF 589 tgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaan ++++ + + ++s++nL+DLAGSER+s + g+RLkE+ + KIAA0042 590 VEGEEHD-------HRITSRINLIDLAGSERCSTAH---TNGDRLKEGVS 629 INkSLsaLGnVInALadnq..kssHiPYRDSKLTrLLQDSLGGGDNsKTl INkSL++LG+VI+AL+++ +++s +iPYR+S+LT+LL++SLGG NsKT+ KIAA0042 630 INKSLLTLGKVISALSEQAnqRSVFIPYRESVLTWLLKESLGG--NSKTA 677 MIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* MIa+iSP++s n eETLsTLr+A+ A+ I+ KIAA0042 678 MIATISPAAS----NIEETLSTLRYANQARLIV 706 PF00225.13.ls: domain 1 of 1, from 368 to 706: score 566.5, E = 2.4e-167 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe RvRP+++rEk +++s+vv +s +++++ ++++ + F +D F++ KIAA0042 368 RVRPFTKREKIEKASQVVFMSGKEITVEHPDtKQVYNFIYDVSFWSF 414 atQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYT + ++p+YAsq +vye++a+pl+e ++eG+N ++FAYGQTGSGK+YT KIAA0042 415 DE----ChPhYASQTTVYEKLAAPLLERAFEGFNTCLFAYGQTGSGKSYT 460 MeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpvfK M+G eepGiiPR +edlF+++++ +++ KIAA0042 461 MMG-----------------FSEEPGIIPRFCEDLFSQVARKQTQ----- 488 PklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNE + ++++++S++E+YNE KIAA0042 489 ----------------------------------EVSYHIEMSFFEVYNE 504 kirDLLspsppqrgspskdnekkkkk.pLrireDpkrGgkmdgvyVkGLt ki+DLL+ + +e +++k+pLr+re+p +G +yV+ L+ KIAA0042 505 KIHDLLVCK----------DENGQRKqPLRVREHPVYG-----PYVEALS 539 eveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdt + V+s+ +++++LelGnk+R++a+T mN++SSRSH++Ft++ +q+ t+ KIAA0042 540 MNIVSSYADIQSWLELGNKQRATAATGMNDKSSRSHSVFTLVMTQTKTEF 589 tgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaan ++++ + + ++s++nL+DLAGSER+s + g+RLkE+ + KIAA0042 590 VEGEEHD-------HRITSRINLIDLAGSERCSTAH---TNGDRLKEGVS 629 INkSLsaLGnVInALadnq..kssHiPYRDSKLTrLLQDSLGGGDNsKTl INkSL++LG+VI+AL+++ +++s +iPYR+S+LT+LL++SLGG NsKT+ KIAA0042 630 INKSLLTLGKVISALSEQAnqRSVFIPYRESVLTWLLKESLGG--NSKTA 677 MIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* MIa+iSP++s n eETLsTLr+A+ A+ I+ KIAA0042 678 MIATISPAAS----NIEETLSTLRYANQARLIV 706 PF00498.16.fs: domain 1 of 1, from 829 to 895: score 48.3, E = 1.1e-13 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +t+G + ++ diql+g i++ H++i++ +g+v KIAA0042 829 TTVGK------YKPNSSHDIQLSGvLIADDHCTIKNFGGTV------ 863 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +++++ + t+vNgk + +e ++L++Gd++ lG KIAA0042 864 ----------SIIPVGEAK----TYVNGKHI--LEITVLRHGDRVILG 895 * KIAA0042 - - PF00498.16.ls: domain 1 of 1, from 829 to 895: score 50.0, E = 7.4e-12 *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf +t+G + ++ diql+g i++ H++i++ +g+v KIAA0042 829 TTVGK------YKPNSSHDIQLSGvLIADDHCTIKNFGGTV------ 863 rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<- +++++ + t+vNgk + +e ++L++Gd++ lG KIAA0042 864 ----------SIIPVGEAK----TYVNGKHI--LEITVLRHGDRVILG 895 * KIAA0042 - - //