hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15432681/chunk_1/iprscan-20080501-15432681.nocrc
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Query sequence: KIAA0041
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00105                                                 231.1    9.2e-65   1
SM00233                                                  73.6    2.4e-17   1
SM00248                                                  42.6    5.1e-08   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     270   366 ..     1    82 []    73.6  2.4e-17
SM00105     1/1     402   523 ..     1   139 []   231.1  9.2e-65
SM00248     1/3     643   672 ..     1    30 []    22.2    0.075
SM00248     2/3     676   705 ..     1    30 []    16.0      5.2
SM00248     3/3     709   738 ..     1    30 []     4.5  1.2e+03

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 270 to 366: score 73.6, E = 2.4e-17
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      +++eG+L k+ ++ +++w +r+f + n++L+y k+ +++    + +L
    KIAA0041   270    IVMEGYLFKRAsnaFkTWNRRWFSIQNNQLVYQKKFkdnPTVVVEDL 316  

                   sgcsvre.p......cFeivt.drtlllqAeseeereeWvealqsaiaka
                   + c+v++ ++ +++ cFe+v+++++  lqA+se+ r+ W++a q  ia a
    KIAA0041   317 RLCTVKHcEdierrfCFEVVSpTKSCMLQADSEKLRQAWIKAVQTSIATA 366  

                   <-*
                      
    KIAA0041     -     -    

SM00105: domain 1 of 1, from 402 to 523: score 231.1, E = 9.2e-65
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                      e alq++++i+ gN+ C+DCG +++P+WaS+nlG++lCieCSGiHRs
    KIAA0041   402    ESALQRVQCIP-GNASCCDCG-LADPRWASINLGITLCIECSGIHRS 446  

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L GvH+SkV  RSltLDtW++ eL +l+ c++GN+++n+++e+n++++  
    KIAA0041   447 L-GVHFSKV--RSLTLDTWEP-ELLKLM-CELGNDVINRVYEANVEKMGI 491  

                   kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                   k+++++         +rq++e++i+aKY+e++f vdk+s +    
    KIAA0041   492 KKPQPG---------QRQEKEAYIRAKYVERKF-VDKYSISL    523  

SM00248: domain 1 of 3, from 643 to 672: score 22.2, E = 0.075
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  TpL  A+  g+l ++++Ll++ga++n    
    KIAA0041   643    NKATPLIQAVLGGSLVTCEFLLQNGANVNQ    672  

SM00248: domain 2 of 3, from 676 to 705: score 16.0, E = 5.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +Gr pLH+A   g+   v l+l++ga+ +a   
    KIAA0041   676    QGRGPLHHATVLGHTGQVCLFLKRGANQHA    705  

SM00248: domain 3 of 3, from 709 to 738: score 4.5, E = 1.2e+03
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+ pL +A+e  n ++v lL  +  + ++   
    KIAA0041   709    EGKDPLSIAVEAANADIVTLLRLARMNEEM    738  

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