hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15432681/chunk_1/iprscan-20080501-15432681.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0041 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.ls Putative GTPase activating protein for Arf 231.8 1.4e-66 1 PF01412.9.fs Putative GTPase activating protein for Arf 229.9 5.2e-66 1 PF00169.19.fs PH domain 72.5 1.3e-21 1 PF00169.19.ls PH domain 74.6 3e-19 1 PF00023.20.fs Ankyrin repeat 53.9 4.8e-14 4 PF00023.20.ls Ankyrin repeat 56.6 7.5e-14 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 270 364 .. 1 92 [] 72.5 1.3e-21 PF00169.19.ls 1/1 270 364 .. 1 92 [] 74.6 3e-19 PF01412.9.ls 1/1 402 523 .. 1 137 [] 231.8 1.4e-66 PF01412.9.fs 1/1 402 523 .. 1 137 [] 229.9 5.2e-66 PF00023.20.fs 1/4 629 640 .. 22 33 .] 0.1 50 PF00023.20.ls 1/3 643 675 .. 1 33 [] 29.2 1.3e-05 PF00023.20.fs 2/4 643 675 .. 1 33 [] 27.2 1.3e-06 PF00023.20.ls 2/3 676 708 .. 1 33 [] 22.1 0.0018 PF00023.20.fs 3/4 676 708 .. 1 33 [] 20.1 0.00013 PF00023.20.ls 3/3 709 739 .. 1 33 [] 5.3 5 PF00023.20.fs 4/4 709 729 .. 1 21 [. 6.5 0.78 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 270 to 364: score 72.5, E = 1.3e-21 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL +++eG+L+k+ ++++k+w +R+f +++++L+y k+ k+ + + +L KIAA0041 270 IVMEGYLFKRAsnAFKTWNRRWFSIQNNQLVYQKKFKdNPTVVVEDL 316 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< + ++v++++d++r++cFe++++++ + lqa+se+ r+ W+ka q +i+ KIAA0041 317 RLCTVKHCEDIERRFCFEVVSpTK-SCMLQADSEKLRQAWIKAVQTSIA 364 -* KIAA0041 - - PF00169.19.ls: domain 1 of 1, from 270 to 364: score 74.6, E = 3e-19 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL +++eG+L+k+ ++++k+w +R+f +++++L+y k+ k+ + + +L KIAA0041 270 IVMEGYLFKRAsnAFKTWNRRWFSIQNNQLVYQKKFKdNPTVVVEDL 316 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< + ++v++++d++r++cFe++++++ + lqa+se+ r+ W+ka q +i+ KIAA0041 317 RLCTVKHCEDIERRFCFEVVSpTK-SCMLQADSEKLRQAWIKAVQTSIA 364 -* KIAA0041 - - PF01412.9.ls: domain 1 of 1, from 402 to 523: score 231.8, E = 1.4e-66 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + +lq++++++ gN+ C+DCg ++P+WaS+nlG++lCieCSGiHR+ KIAA0041 402 ESALQRVQCIP-GNASCCDCGL-ADPRWASINLGITLCIECSGIHRS 446 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH+SkV RSltLD+W+p el+kl+ c++GN+++n+++E+n++++ KIAA0041 447 L-GVHFSKV--RSLTLDTWEP-ELLKLM-CELGNDVINRVYEANVEKMGI 491 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* k++++ +rq++e++i+aKY+e++fv+k++ + KIAA0041 492 KKPQPG--------QRQEKEAYIRAKYVERKFVDKYSISL 523 PF01412.9.fs: domain 1 of 1, from 402 to 523: score 229.9, E = 5.2e-66 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + +lq++++++ gN+ C+DCg ++P+WaS+nlG++lCieCSGiHR+ KIAA0041 402 ESALQRVQCIP-GNASCCDCGL-ADPRWASINLGITLCIECSGIHRS 446 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH+SkV RSltLD+W+p el+kl+ c++GN+++n+++E+n++++ KIAA0041 447 L-GVHFSKV--RSLTLDTWEP-ELLKLM-CELGNDVINRVYEANVEKMGI 491 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* k++++ +rq++e++i+aKY+e++fv+k++ + KIAA0041 492 KKPQPG--------QRQEKEAYIRAKYVERKFVDKYSISL 523 PF00023.20.fs: domain 1 of 4, from 629 to 640: score 0.1, E = 50 *->lsqGAdlnaqdd<-* l +GAd+n + KIAA0041 629 LAHGADVNWANS 640 PF00023.20.ls: domain 1 of 3, from 643 to 675: score 29.2, E = 1.3e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPL A+l g+l +++Ll++GA++n +d KIAA0041 643 NKATPLIQAVLGGSLVTCEFLLQNGANVNQRDV 675 PF00023.20.fs: domain 2 of 4, from 643 to 675: score 27.2, E = 1.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPL A+l g+l +++Ll++GA++n +d KIAA0041 643 NKATPLIQAVLGGSLVTCEFLLQNGANVNQRDV 675 PF00023.20.ls: domain 2 of 3, from 676 to 708: score 22.1, E = 0.0018 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLH+A g++ v l+l++GA+ +a+d KIAA0041 676 QGRGPLHHATVLGHTGQVCLFLKRGANQHATDE 708 PF00023.20.fs: domain 3 of 4, from 676 to 708: score 20.1, E = 0.00013 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLH+A g++ v l+l++GA+ +a+d KIAA0041 676 QGRGPLHHATVLGHTGQVCLFLKRGANQHATDE 708 PF00023.20.ls: domain 3 of 3, from 709 to 739: score 5.3, E = 5 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G PL +A++ n+++v+lL A n + KIAA0041 709 EGKDPLSIAVEAANADIVTLLRL--ARMNEEMR 739 PF00023.20.fs: domain 4 of 4, from 709 to 729: score 6.5, E = 0.78 *->dGfTPLHlAalrgnlevvklL<-* +G PL +A++ n+++v+lL KIAA0041 709 EGKDPLSIAVEAANADIVTLL 729 //