# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ha02030.fasta.nr -Q ../query/KIAA0039.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0039, 491 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7820025 sequences Expectation_n fit: rho(ln(x))= 6.3323+/-0.000202; mu= 6.3243+/- 0.011 mean_var=133.7412+/-25.462, 0's: 36 Z-trim: 49 B-trim: 452 in 1/68 Lambda= 0.110903 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|114639346|ref|XP_508641.2| PREDICTED: polymeras ( 523) 3135 513.0 7.3e-143 gi|109107913|ref|XP_001082315.1| PREDICTED: polyme ( 523) 3093 506.3 7.7e-141 gi|17375506|sp|Q15054.2|DPOD3_HUMAN RecName: Full= ( 466) 3009 492.8 7.9e-137 gi|221046128|dbj|BAH14741.1| unnamed protein produ ( 466) 3000 491.4 2.1e-136 gi|194380284|dbj|BAG63909.1| unnamed protein produ ( 466) 3000 491.4 2.1e-136 gi|80474538|gb|AAI08910.1| POLD3 protein [Homo sap ( 427) 2754 452.0 1.4e-124 gi|73987968|ref|XP_534010.2| PREDICTED: similar to ( 464) 2734 448.8 1.4e-123 gi|194673373|ref|XP_617789.4| PREDICTED: polymeras ( 548) 2652 435.8 1.4e-119 gi|149068814|gb|EDM18366.1| polymerase (DNA-direct ( 461) 2552 419.7 8e-115 gi|66911642|gb|AAH98010.1| Polymerase (DNA-directe ( 462) 2546 418.8 1.6e-114 gi|148684474|gb|EDL16421.1| polymerase (DNA-direct ( 487) 2545 418.6 1.8e-114 gi|12034722|gb|AAG45967.1| unknown [Mus musculus] ( 491) 2533 416.7 6.9e-114 gi|26327601|dbj|BAC27544.1| unnamed protein produc ( 461) 2527 415.7 1.3e-113 gi|74207799|dbj|BAE40139.1| unnamed protein produc ( 461) 2518 414.3 3.5e-113 gi|17375622|sp|Q9EQ28.2|DPOD3_MOUSE RecName: Full= ( 462) 2515 413.8 4.8e-113 gi|124106280|sp|P84798.2|DPOD3_BOVIN RecName: Full ( 466) 2483 408.7 1.7e-111 gi|116283840|gb|AAH32636.1| POLD3 protein [Homo sa ( 384) 2469 406.4 7e-111 gi|73987966|ref|XP_860583.1| PREDICTED: similar to ( 423) 2454 404.0 3.9e-110 gi|80477913|gb|AAI08909.1| POLD3 protein [Homo sap ( 360) 2335 384.9 1.9e-104 gi|150834519|dbj|BAF69021.1| DNA-directed polymera ( 400) 2322 382.9 8.7e-104 gi|149068813|gb|EDM18365.1| polymerase (DNA-direct ( 453) 2258 372.7 1.1e-100 gi|148684473|gb|EDL16420.1| polymerase (DNA-direct ( 355) 1865 309.7 8.2e-82 gi|53132554|emb|CAG31915.1| hypothetical protein [ ( 463) 1716 286.0 1.5e-74 gi|154757424|gb|AAI51728.1| POLD3 protein [Bos tau ( 299) 1666 277.8 2.8e-72 gi|62201610|gb|AAH92454.1| POLD3 protein [Homo sap ( 267) 1658 276.4 6.2e-72 gi|67967585|dbj|BAE00275.1| unnamed protein produc ( 253) 1421 238.5 1.6e-60 gi|74189622|dbj|BAE36810.1| unnamed protein produc ( 263) 1351 227.3 3.8e-57 gi|50415212|gb|AAH77426.1| POLD3 protein [Xenopus ( 476) 1233 208.7 2.8e-51 gi|62740173|gb|AAH94211.1| POLD3 protein [Xenopus ( 474) 1225 207.4 6.7e-51 gi|34097964|dbj|BAC82197.1| DNA polymerase delta p ( 454) 1218 206.3 1.4e-50 gi|47228117|emb|CAF97746.1| unnamed protein produc ( 462) 1155 196.2 1.5e-47 gi|112421218|ref|NP_001036234.1| polymerase (DNA-d ( 457) 1120 190.6 7.4e-46 gi|18088276|gb|AAH20587.1| POLD3 protein [Homo sap ( 168) 1105 187.8 1.9e-45 gi|145207295|gb|AAH76031.2| Zgc:136471 protein [Da ( 432) 1049 179.2 1.9e-42 gi|78070741|gb|AAI07843.1| Zgc:136471 protein [Dan ( 433) 1048 179.0 2.1e-42 gi|194386904|dbj|BAG59818.1| unnamed protein produ ( 150) 1006 171.9 1.1e-40 gi|218681782|pdb|3E0J|B Chain B, X-Ray Structure O ( 144) 928 159.4 5.8e-37 gi|209151883|gb|ACI33087.1| DNA polymerase subunit ( 449) 882 152.5 2.1e-34 gi|62079598|gb|AAX61145.1| DNA polymerase delta su ( 446) 863 149.5 1.7e-33 gi|62857999|ref|NP_001016556.1| polymerase (DNA-di ( 214) 852 147.4 3.5e-33 gi|94574330|gb|AAI16551.1| Zgc:136471 protein [Dan ( 395) 850 147.3 6.8e-33 gi|210124557|gb|EEA72253.1| hypothetical protein B ( 499) 587 105.3 3.7e-20 gi|210093416|gb|EEA41619.1| hypothetical protein B ( 535) 489 89.7 2e-15 gi|156211080|gb|EDO32210.1| predicted protein [Nem ( 489) 441 82.0 3.9e-13 gi|156541980|ref|XP_001599516.1| PREDICTED: hypoth ( 448) 403 75.9 2.5e-11 gi|72112491|ref|XP_791644.1| PREDICTED: similar to ( 490) 399 75.3 4.2e-11 gi|190589595|gb|EDV29617.1| hypothetical protein T ( 394) 378 71.8 3.7e-10 gi|163777864|gb|EDQ91480.1| predicted protein [Mon ( 526) 352 67.8 8e-09 gi|149600947|ref|XP_001521439.1| PREDICTED: hypoth ( 141) 336 64.6 1.9e-08 gi|157338381|emb|CAO39425.1| unnamed protein produ ( 480) 330 64.2 8.6e-08 >>gi|114639346|ref|XP_508641.2| PREDICTED: polymerase (D (523 aa) initn: 3135 init1: 3135 opt: 3135 Z-score: 2721.1 bits: 513.0 E(): 7.3e-143 Smith-Waterman score: 3135; 98.778% identity (99.593% similar) in 491 aa overlap (1-491:33-523) 10 20 30 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQL :::::::::::::::::::::::::::::: gi|114 RQAFEFDPSRAAVVRRLRCRGNDPGPGREQRRFPPAGAVAVIERGVRGGSQRCRTMADQL 10 20 30 40 50 60 40 50 60 70 80 90 KIAA00 YLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSG 70 80 90 100 110 120 100 110 120 130 140 150 KIAA00 SLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSN 130 140 150 160 170 180 160 170 180 190 200 210 KIAA00 LQNCSKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LQNCSKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQV 190 200 210 220 230 240 220 230 240 250 260 270 KIAA00 SQQPKGIMGMFASKAAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFGKAAMN :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|114 SQQPKGIMGMFASKAAAKTQETNKETKTEAKEVTNASSAGNKAPGKGNMMSNFFGKAAMN 250 260 270 280 290 300 280 290 300 310 320 330 KIAA00 KFKVNLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVA :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KLKVNLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVA 310 320 330 340 350 360 340 350 360 370 380 390 KIAA00 LSDDETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLEPVPKT :::::::::::::::::::::::::::::::: ::::::::::::: ::::::::::::: gi|114 LSDDETKETENMRKKRRRIKLPESDSSEDEVFSDSPGAYEAESPSPLPPPSPPLEPVPKT 370 380 390 400 410 420 400 410 420 430 440 450 KIAA00 EPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMKTSSVH :::::::::::::::::::::::::::.::::::::::::::::::::::::.::::::: gi|114 EPEPPSVKSSSGENKRKRKRVLKSKTYVDGEGCIVTEKVYESESCTDSEEELKMKTSSVH 430 440 450 460 470 480 460 470 480 490 KIAA00 RPPAMTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK ::::::::::::::::::::::::::::::::::::::::: gi|114 RPPAMTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK 490 500 510 520 >>gi|109107913|ref|XP_001082315.1| PREDICTED: polymerase (523 aa) initn: 3093 init1: 3093 opt: 3093 Z-score: 2684.8 bits: 506.3 E(): 7.7e-141 Smith-Waterman score: 3093; 96.741% identity (99.389% similar) in 491 aa overlap (1-491:33-523) 10 20 30 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQL :::::::::.:.:::..::::::::::::: gi|109 QQAFEFDSLRAAVVRRFRCRGNDPGPGREQRRFPPAGAVSVVERGAKGGSQRCRTMADQL 10 20 30 40 50 60 40 50 60 70 80 90 KIAA00 YLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSG 70 80 90 100 110 120 100 110 120 130 140 150 KIAA00 SLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSN 130 140 150 160 170 180 160 170 180 190 200 210 KIAA00 LQNCSKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQV ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|109 LQNCSKFSAIQCAAAVPRSPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQV 190 200 210 220 230 240 220 230 240 250 260 270 KIAA00 SQQPKGIMGMFASKAAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFGKAAMN :::::::::::::::::::::::::.:::::::::::.:::::::::::::::::::::: gi|109 SQQPKGIMGMFASKAAAKTQETNKEAKTEAKEVTNASSAGNKAPGKGNMMSNFFGKAAMN 250 260 270 280 290 300 280 290 300 310 320 330 KIAA00 KFKVNLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVA :.:::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|109 KLKVNLDSEQAVKEEKIVEQPTVSVTEPKLAAPAGLKKSSKKAEPVKVLQKEKKRGKRVA 310 320 330 340 350 360 340 350 360 370 380 390 KIAA00 LSDDETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLEPVPKT ::::::::::::.::::::::::::::::::::::::::::::: ::::::::::::::: gi|109 LSDDETKETENMKKKRRRIKLPESDSSEDEVFPDSPGAYEAESPPPPPPPSPPLEPVPKT 370 380 390 400 410 420 400 410 420 430 440 450 KIAA00 EPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMKTSSVH :::::::::::::::::::::::::::.: ::::::::::::::::::::::.::::::: gi|109 EPEPPSVKSSSGENKRKRKRVLKSKTYVDEEGCIVTEKVYESESCTDSEEELKMKTSSVH 430 440 450 460 470 480 460 470 480 490 KIAA00 RPPAMTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK :::::::::::.::::: ::::::::::::::::::::::: gi|109 RPPAMTVKKEPKEERKGLKKGTAALGKANRQVSITGFFQRK 490 500 510 520 >>gi|17375506|sp|Q15054.2|DPOD3_HUMAN RecName: Full=DNA (466 aa) initn: 3009 init1: 3009 opt: 3009 Z-score: 2612.8 bits: 492.8 E(): 7.9e-137 Smith-Waterman score: 3009; 100.000% identity (100.000% similar) in 466 aa overlap (26-491:1-466) 10 20 30 40 50 60 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN ::::::::::::::::::::::::::::::::::: gi|173 MADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN 10 20 30 70 80 90 100 110 120 KIAA00 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT 40 50 60 70 80 90 130 140 150 160 170 180 KIAA00 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL 220 230 240 250 260 270 310 320 330 340 350 360 KIAA00 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA00 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG 340 350 360 370 380 390 430 440 450 460 470 480 KIAA00 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR 400 410 420 430 440 450 490 KIAA00 QVSITGFFQRK ::::::::::: gi|173 QVSITGFFQRK 460 >>gi|221046128|dbj|BAH14741.1| unnamed protein product [ (466 aa) initn: 3000 init1: 3000 opt: 3000 Z-score: 2605.0 bits: 491.4 E(): 2.1e-136 Smith-Waterman score: 3000; 99.785% identity (99.785% similar) in 466 aa overlap (26-491:1-466) 10 20 30 40 50 60 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN :::::::::: :::::::::::::::::::::::: gi|221 MADQLYLENIGEFVTDQNKIVTYKWLSYTLGVHVN 10 20 30 70 80 90 100 110 120 KIAA00 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT 40 50 60 70 80 90 130 140 150 160 170 180 KIAA00 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL 220 230 240 250 260 270 310 320 330 340 350 360 KIAA00 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA00 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG 340 350 360 370 380 390 430 440 450 460 470 480 KIAA00 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR 400 410 420 430 440 450 490 KIAA00 QVSITGFFQRK ::::::::::: gi|221 QVSITGFFQRK 460 >>gi|194380284|dbj|BAG63909.1| unnamed protein product [ (466 aa) initn: 3000 init1: 3000 opt: 3000 Z-score: 2605.0 bits: 491.4 E(): 2.1e-136 Smith-Waterman score: 3000; 99.785% identity (99.785% similar) in 466 aa overlap (26-491:1-466) 10 20 30 40 50 60 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN ::::::::::::::::::::::::::::::::::: gi|194 MADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN 10 20 30 70 80 90 100 110 120 KIAA00 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|194 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREGKLEAVKSKLAVT 40 50 60 70 80 90 130 140 150 160 170 180 KIAA00 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL 220 230 240 250 260 270 310 320 330 340 350 360 KIAA00 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA00 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG 340 350 360 370 380 390 430 440 450 460 470 480 KIAA00 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR 400 410 420 430 440 450 490 KIAA00 QVSITGFFQRK ::::::::::: gi|194 QVSITGFFQRK 460 >>gi|80474538|gb|AAI08910.1| POLD3 protein [Homo sapiens (427 aa) initn: 2754 init1: 2754 opt: 2754 Z-score: 2392.8 bits: 452.0 E(): 1.4e-124 Smith-Waterman score: 2754; 100.000% identity (100.000% similar) in 427 aa overlap (65-491:1-427) 40 50 60 70 80 90 KIAA00 IDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQ :::::::::::::::::::::::::::::: gi|804 MLYDYVERKRKENSGAQLHVTYLVSGSLIQ 10 20 30 100 110 120 130 140 150 KIAA00 NGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 NGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNC 40 50 60 70 80 90 160 170 180 190 200 210 KIAA00 SKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQVSQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 SKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQVSQQP 100 110 120 130 140 150 220 230 240 250 260 270 KIAA00 KGIMGMFASKAAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 KGIMGMFASKAAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKV 160 170 180 190 200 210 280 290 300 310 320 330 KIAA00 NLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 NLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDD 220 230 240 250 260 270 340 350 360 370 380 390 KIAA00 ETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 ETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEP 280 290 300 310 320 330 400 410 420 430 440 450 KIAA00 PSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMKTSSVHRPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|804 PSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMKTSSVHRPPA 340 350 360 370 380 390 460 470 480 490 KIAA00 MTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK ::::::::::::::::::::::::::::::::::::: gi|804 MTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK 400 410 420 >>gi|73987968|ref|XP_534010.2| PREDICTED: similar to DNA (464 aa) initn: 1307 init1: 1307 opt: 2734 Z-score: 2375.0 bits: 448.8 E(): 1.4e-123 Smith-Waterman score: 2734; 90.987% identity (97.425% similar) in 466 aa overlap (26-491:1-464) 10 20 30 40 50 60 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN ::::::::::::::::::::::::::::::::::: gi|739 MADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN 10 20 30 70 80 90 100 110 120 KIAA00 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT 40 50 60 70 80 90 130 140 150 160 170 180 KIAA00 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:: gi|739 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSS-EKF 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA :::.:...::: ::.:::::::.::.:::. ::::::::::::::..:::..:::::::. gi|739 EQSNLQVQSETPANHELTTNGHSPPTSKQILQQPKGIMGMFASKAVSKTQDVNKETKTET 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL :::::.:..:::::::::.::::::::::::.::::::::::::::::::: :::::::: gi|739 KEVTNVSSVGNKAPGKGNVMSNFFGKAAMNKLKVNLDSEQAVKEEKIVEQPPVSVTEPKL 220 230 240 250 260 270 310 320 330 340 350 360 KIAA00 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE :.:.:::::::::::::. :::::::::: ::::::::::::.::::::::::::::::: gi|739 AVPTGLKKSSKKAEPVKMQQKEKKRGKRVELSDDETKETENMKKKRRRIKLPESDSSEDE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA00 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG :. :::: ::::::::::::::: ::::::::::::::::::: ::::::::::::..: gi|739 VIADSPGDYEAESPSPPPPPSPPPEPVPKTEPEPPSVKSSSGE-KRKRKRVLKSKTFVDE 340 350 360 370 380 390 430 440 450 460 470 480 KIAA00 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR ::::::::::::::::::::::.:::::.::: .:::::::.:::::::::::::::::: gi|739 EGCIVTEKVYESESCTDSEEELKMKTSSIHRPSTMTVKKEPKEERKGPKKGTAALGKANR 400 410 420 430 440 450 490 KIAA00 QVSITGFFQRK ::::::::::: gi|739 QVSITGFFQRK 460 >>gi|194673373|ref|XP_617789.4| PREDICTED: polymerase (D (548 aa) initn: 1116 init1: 1093 opt: 2652 Z-score: 2303.2 bits: 435.8 E(): 1.4e-119 Smith-Waterman score: 2652; 86.947% identity (94.526% similar) in 475 aa overlap (18-491:77-548) 10 20 30 40 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVT ::.:: :::::.::::::::::::::::: gi|194 RGKRPGTWEGKKDVSRRRELRLWRLGELSCGGAQRRGTMADQFYLENIDEFVTDQNKIVT 50 60 70 80 90 100 50 60 70 80 90 100 KIAA00 YKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 YKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVRE 110 120 130 140 150 160 110 120 130 140 150 160 KIAA00 DKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVP :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|194 DKLEAVKSKLAVTASVHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVP 170 180 190 200 210 220 170 180 190 200 210 220 KIAA00 RAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAA ::::::::: .:.::: .: : ::..::::::::::. :: ::::::::::::::::. gi|194 RAPAESSSS-EKLEQSDPPVSPEMQASDELTTNGHGPPVPKQSSQQPKGIMGMFASKAAS 230 240 250 260 270 280 230 240 250 260 270 280 KIAA00 KTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKI :.:..::::::::::: :::..: :::::::..:::::::::::.:::::::: ::::: gi|194 KAQDANKETKTEAKEVMNASSVGPKAPGKGNVISNFFGKAAMNKLKVNLDSEQEVKEEKK 290 300 310 320 330 340 290 300 310 320 330 340 KIAA00 VEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRR :::: .::::::::.:. :::::::::::.. :::::: :.. ::::::::::::.:::: gi|194 VEQPPLSVTEPKLAAPVDLKKSSKKAEPVRMQQKEKKRRKQMELSDDETKETENMKKKRR 350 360 370 380 390 400 350 360 370 380 390 400 KIAA00 RIKLPESDSSEDEVFPDSPGAYEAESPSPPPP-PSPPLEPVPKTEPEPPSVKSSSGENKR ::::::::::::::.::::::::::::::::: ::: ::: ::::::: ::.:.::::: gi|194 RIKLPESDSSEDEVIPDSPGAYEAESPSPPPPSPSP--EPVLKTEPEPPPVKGSDGENKR 410 420 430 440 450 460 410 420 430 440 450 460 KIAA00 KRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERK ::::::::::. : :::.::::::::::::::::::.::::::::::::.:::::.:::: gi|194 KRKRVLKSKTFTDEEGCMVTEKVYESESCTDSEEELKMKTSSVHRPPAMAVKKEPKEERK 470 480 490 500 510 520 470 480 490 KIAA00 GPKKGTAALGKANRQVSITGFFQRK ::::::::.:::::::.:::::::: gi|194 GPKKGTAAMGKANRQVAITGFFQRK 530 540 >>gi|149068814|gb|EDM18366.1| polymerase (DNA-directed), (461 aa) initn: 1647 init1: 991 opt: 2552 Z-score: 2217.7 bits: 419.7 E(): 8e-115 Smith-Waterman score: 2552; 85.622% identity (95.064% similar) in 466 aa overlap (26-491:1-461) 10 20 30 40 50 60 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN ::.:::::::::::::::::::::::::::::::: gi|149 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN 10 20 30 70 80 90 100 110 120 KIAA00 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT :::::::.::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|149 QAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDRLEAVKSKLAVT 40 50 60 70 80 90 130 140 150 160 170 180 KIAA00 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:: gi|149 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSS-RKF 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA :::.:. .:::::. ::::::::::::::.::::::::::. ::::.:::.:::.::::: gi|149 EQSNLQAASETQAS-ELTTNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKDTKTEA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL .:::.::.::.:::::::.::::::::::.:.:::::::::::::: :::: :::.:::: gi|149 REVTSASSAGGKAPGKGNVMSNFFGKAAMSKLKVNLDSEQAVKEEKTVEQPPVSVAEPKL 220 230 240 250 260 270 310 320 330 340 350 360 KIAA00 ATPAGLKKSSKKAEPVKVLQKEKKRGKRVALSDDETKETENMRKKRRRIKLPESDSSEDE :.: .:::::.:.::::. ::::.::::: :::.:.:::::..:::::::::.::::::: gi|149 AAPPALKKSSRKSEPVKMQQKEKNRGKRVDLSDEEAKETENLKKKRRRIKLPQSDSSEDE 280 290 300 310 320 330 370 380 390 400 410 420 KIAA00 VFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDG :: ::: .:: :::::: ::: .::::::: :: :: :::::::::::::::::..: gi|149 VFADSPEMFEAVSPSPPPA-SPPPDPVPKTEP-PP-VKRSSGENKRKRKRVLKSKTFVDE 340 350 360 370 380 390 430 440 450 460 470 480 KIAA00 EGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKANR :::.::::::::::::::::: .:: .:..:::: :::.::::::::::::.:::::::: gi|149 EGCMVTEKVYESESCTDSEEETKMKMASAQRPPAATVKREPREERKGPKKGAAALGKANR 400 410 420 430 440 450 490 KIAA00 QVSITGFFQRK :::::::::.: gi|149 QVSITGFFQKK 460 >>gi|66911642|gb|AAH98010.1| Polymerase (DNA-directed), (462 aa) initn: 1602 init1: 959 opt: 2546 Z-score: 2212.5 bits: 418.8 E(): 1.6e-114 Smith-Waterman score: 2546; 85.653% identity (94.861% similar) in 467 aa overlap (26-491:1-462) 10 20 30 40 50 60 KIAA00 RRFPPAGAVAVIERGVRGGSQRCRTMADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN ::.:::::::::::::::::::::::::::::::: gi|669 MAEQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVN 10 20 30 70 80 90 100 110 120 KIAA00 QAKQMLYDYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVT :::::::.::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|669 QAKQMLYEYVERKRKENSGAQLHVTYLVSGSLIQNGHSCHKVAVVREDRLEAVKSKLAVT 40 50 60 70 80 90 130 140 150 160 170 180 KIAA00 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: .:: gi|669 ASIHVYSIQKAMLKDSGPLFNTDYDILKSNLQNCSKFSAIQCAAAVPRAPAESSSS-RKF 100 110 120 130 140 150 190 200 210 220 230 240 KIAA00 EQSHLHMSSETQANNELTTNGHGPPASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEA :::.:. .:::::. ::::::::::::::.::::::::::. ::::.:::.:::.::::: gi|669 EQSNLQAASETQAS-ELTTNGHGPPASKQASQQPKGIMGMLISKAATKTQDTNKDTKTEA 160 170 180 190 200 210 250 260 270 280 290 300 KIAA00 KEVTNASAAGNKAPGKGNMMSNFFGKAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKL .:::.::.::.:::::::.::::::::::.:.:::::::::::::: :::: :::.:::: gi|669 REVTSASSAGGKAPGKGNVMSNFFGKAAMSKLKVNLDSEQAVKEEKTVEQPPVSVAEPKL 220 230 240 250 260 270 310 320 330 340 350 KIAA00 ATPAGLKKSSKKAEPVKVLQKEKK-RGKRVALSDDETKETENMRKKRRRIKLPESDSSED :.: .:::::.:.::::. ::::: ::::: :::.:.:::::..:::::::::.:::::: gi|669 AAPPALKKSSRKSEPVKMQQKEKKCRGKRVDLSDEEAKETENLKKKRRRIKLPQSDSSED 280 290 300 310 320 330 360 370 380 390 400 410 KIAA00 EVFPDSPGAYEAESPSPPPPPSPPLEPVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLD ::: ::: .:: :::::: ::: .::::::: :: :: :::::::::::::::::..: gi|669 EVFADSPEMFEAVSPSPPPA-SPPPDPVPKTEP-PP-VKRSSGENKRKRKRVLKSKTFVD 340 350 360 370 380 390 420 430 440 450 460 470 KIAA00 GEGCIVTEKVYESESCTDSEEELNMKTSSVHRPPAMTVKKEPREERKGPKKGTAALGKAN :::.::::::::::::::::: .:: .:..:::: :::.::::::::::::.::::::: gi|669 EEGCMVTEKVYESESCTDSEEETKMKMASAQRPPAATVKREPREERKGPKKGAAALGKAN 400 410 420 430 440 450 480 490 KIAA00 RQVSITGFFQRK ::::::::::.: gi|669 RQVSITGFFQKK 460 491 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Tue Mar 3 16:21:49 2009 done: Tue Mar 3 16:25:52 2009 Total Scan time: 1458.350 Total Display time: 0.190 Function used was FASTA [version 34.26.5 April 26, 2007]