hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15382662/chunk_1/iprscan-20080501-15382662.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0038 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or 59.7 5.6e-16 1 PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or 61.6 2.4e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00076.12.fs 1/1 46 115 .. 1 74 [] 59.7 5.6e-16 PF00076.12.ls 1/1 46 115 .. 1 74 [] 61.6 2.4e-15 Alignments of top-scoring domains: PF00076.12.fs: domain 1 of 1, from 46 to 115: score 59.7, E = 5.6e-16 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV +VgNLp++t + d+ ++F++ +i s+++vrD + t++ kGf++V KIAA0038 46 AYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRD--KDTDKFKGFCYV 89 eFedeedAekAldalnGkelggrelrv<-* eF+ ++ ++Al ++G lg+r lrv KIAA0038 90 EFDEVDSLKEALT-YDGALLGDRSLRV 115 PF00076.12.ls: domain 1 of 1, from 46 to 115: score 61.6, E = 2.4e-15 *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV +VgNLp++t + d+ ++F++ +i s+++vrD + t++ kGf++V KIAA0038 46 AYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRD--KDTDKFKGFCYV 89 eFedeedAekAldalnGkelggrelrv<-* eF+ ++ ++Al ++G lg+r lrv KIAA0038 90 EFDEVDSLKEALT-YDGALLGDRSLRV 115 //