hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15281842/chunk_1/iprscan-20080501-15281842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0032 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 476.5 3.1e-140 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 474.6 1.1e-139 1 PF00415.9.fs Regulator of chromosome condensation (RCC1) 185.5 9.1e-53 8 PF00415.9.ls Regulator of chromosome condensation (RCC1) 183.5 4.7e-52 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00415.9.fs 2/8 56 103 .. 1 68 [] 27.0 3.7e-07 PF00415.9.ls 1/6 56 103 .. 1 68 [] 28.7 1.9e-05 PF00415.9.ls 2/6 106 156 .. 1 68 [] 41.0 3.9e-09 PF00415.9.fs 3/8 106 156 .. 1 68 [] 39.2 1.1e-10 PF00415.9.ls 3/6 159 209 .. 1 68 [] 38.7 1.8e-08 PF00415.9.fs 4/8 159 209 .. 1 68 [] 37.0 5e-10 PF00415.9.ls 4/6 212 261 .. 1 68 [] 44.3 3.9e-10 PF00415.9.fs 5/8 212 261 .. 1 68 [] 42.5 1.3e-11 PF00632.15.fs 1/1 756 1054 .] 1 351 [] 474.6 1.1e-139 PF00632.15.ls 1/1 756 1054 .] 1 351 [] 476.5 3.1e-140 Alignments of top-scoring domains: PF00415.9.fs: domain 2 of 8, from 56 to 103: score 27.0, E = 3.7e-07 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG VY+ G+ ++ GqLG e e++ +P ++ KIAA0032 56 DGEVYTCGL--NTKGQLG--HEREGN-----------KPEQI----- 82 ssslsekVvsvasGgqHtval<-* + + va+G +H al KIAA0032 83 GALADQHIIHVACGESHSLAL 103 PF00415.9.ls: domain 1 of 6, from 56 to 103: score 28.7, E = 1.9e-05 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG VY+ G+ ++ GqLG e e++ +P ++ KIAA0032 56 DGEVYTCGL--NTKGQLG--HEREGN-----------KPEQI----- 82 ssslsekVvsvasGgqHtval<-* + + va+G +H al KIAA0032 83 GALADQHIIHVACGESHSLAL 103 PF00415.9.ls: domain 2 of 6, from 106 to 156: score 41.0, E = 3.9e-09 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G+++s+G g GqLGl ++++ vP l+ KIAA0032 106 RGQLFSWGA--GSDGQLGLMTTEDSVA----------VPRLI----- 135 ssslsekVvsvasGgqHtval<-* ++ ++v++G+ H al KIAA0032 136 QKLNQQTILQVSCGNWHCLAL 156 PF00415.9.fs: domain 3 of 8, from 106 to 156: score 39.2, E = 1.1e-10 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G+++s+G g GqLGl ++++ vP l+ KIAA0032 106 RGQLFSWGA--GSDGQLGLMTTEDSVA----------VPRLI----- 135 ssslsekVvsvasGgqHtval<-* ++ ++v++G+ H al KIAA0032 136 QKLNQQTILQVSCGNWHCLAL 156 PF00415.9.ls: domain 3 of 6, from 159 to 209: score 38.7, E = 1.8e-08 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG+ +++G + GqLGlg e +P+ v KIAA0032 159 DGQFFTWGK--NSHGQLGLGKEFPSQA----------SPQRV----- 188 ssslsekVvsvasGgqHtval<-* s + + +va+Gg H +al KIAA0032 189 RSLEGIPLAQVAAGGAHSFAL 209 PF00415.9.fs: domain 4 of 8, from 159 to 209: score 37.0, E = 5e-10 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG+ +++G + GqLGlg e +P+ v KIAA0032 159 DGQFFTWGK--NSHGQLGLGKEFPSQA----------SPQRV----- 188 ssslsekVvsvasGgqHtval<-* s + + +va+Gg H +al KIAA0032 189 RSLEGIPLAQVAAGGAHSFAL 209 PF00415.9.ls: domain 4 of 6, from 212 to 261: score 44.3, E = 3.9e-10 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+++G+ ++ GqLGl e + +P v KIAA0032 212 SGAVFGWGM--NNAGQLGLSDEKDRE-----------SPCHV----- 240 ssslsekVvsvasGgqHtval<-* + + kVv ++G Ht++l KIAA0032 241 KLLRTQKVVYISCGEEHTAVL 261 PF00415.9.fs: domain 5 of 8, from 212 to 261: score 42.5, E = 1.3e-11 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+++G+ ++ GqLGl e + +P v KIAA0032 212 SGAVFGWGM--NNAGQLGLSDEKDRE-----------SPCHV----- 240 ssslsekVvsvasGgqHtval<-* + + kVv ++G Ht++l KIAA0032 241 KLLRTQKVVYISCGEEHTAVL 261 PF00632.15.fs: domain 1 of 1, from 756 to 1054: score 474.6, E = 1.1e-139 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Ll +el+nP yg+F+y ++ds+ l+++ + ++ KIAA0032 756 LLLLKELLNPIYGMFTY-----------YQDSNLLWFSDTCFVE--- 788 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD +++F++iG+ +GlA+yn++++d++Fp+a+YKkLL ++++ leDl++++ KIAA0032 789 -HNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLL--NVKPGLEDLKELS 835 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas P+ ++SL++ll+++g+ dvee+++L+F+++ es + KIAA0032 836 PTEGRSLQELLDYPGE---------DVEETFCLNFTICRES---Y----- 868 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G++++ L+P+G+n+ V ++N++e+V++yv+y ++ ++ + + AF++ KIAA0032 869 --GVIEQKK-LIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSS 915 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF +v+++++L+lF+p+EL+ +++G+ + ++++ L++ +Ykg Y++++p KIAA0032 916 GFLKVCGGKVLELFQPSELRAMMVGNSN-YNWEELEETAIYKGDYSATHP 964 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk t++ FWe ++ef+ e++kk+L+F TGs+R+P+ G++ Lq KIAA0032 965 --TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQ--------- 1003 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG + I+ + ++++LP+AHTC+N+LdLP YsSkEiL +L++A ++ eG KIAA0032 1004 IVIQST--ASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQAL-DNYEG 1050 Fgle<-* F+l+ KIAA0032 1051 FSLA 1054 PF00632.15.ls: domain 1 of 1, from 756 to 1054: score 476.5, E = 3.1e-140 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Ll +el+nP yg+F+y ++ds+ l+++ + ++ KIAA0032 756 LLLLKELLNPIYGMFTY-----------YQDSNLLWFSDTCFVE--- 788 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD +++F++iG+ +GlA+yn++++d++Fp+a+YKkLL ++++ leDl++++ KIAA0032 789 -HNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLL--NVKPGLEDLKELS 835 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas P+ ++SL++ll+++g+ dvee+++L+F+++ es + KIAA0032 836 PTEGRSLQELLDYPGE---------DVEETFCLNFTICRES---Y----- 868 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G++++ L+P+G+n+ V ++N++e+V++yv+y ++ ++ + + AF++ KIAA0032 869 --GVIEQKK-LIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSS 915 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF +v+++++L+lF+p+EL+ +++G+ + ++++ L++ +Ykg Y++++p KIAA0032 916 GFLKVCGGKVLELFQPSELRAMMVGNSN-YNWEELEETAIYKGDYSATHP 964 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk t++ FWe ++ef+ e++kk+L+F TGs+R+P+ G++ Lq KIAA0032 965 --TVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQ--------- 1003 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG + I+ + ++++LP+AHTC+N+LdLP YsSkEiL +L++A ++ eG KIAA0032 1004 IVIQST--ASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQAL-DNYEG 1050 Fgle<-* F+l+ KIAA0032 1051 FSLA 1054 //