hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15263946/chunk_1/iprscan-20080501-15263946.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0031 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR00231 small_GTP: small GTP-binding protein domain 30.8 1.6e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR00231 1/1 132 306 .. 1 186 [] 30.8 1.6e-06 Alignments of top-scoring domains: TIGR00231: domain 1 of 1, from 132 to 306: score 30.8, E = 1.6e-06 *->lkdikigivGdpnvGkstllnrllgnkgsitesgptd.gttrdyvte + +++++ G+ +Gk++ ++ l+ + + ++ d+ +++ KIAA0031 132 ELIRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDqDLCYTDILF 177 sieedgkti.....t.gat.fqW.gykfnllDtpGlhrqedydalrrlyy ++e+g+ i++++ t + + + ++y+fn++DtpG ++ + KIAA0031 178 TEQERGVGIkstpvTvVLPdTKGkSYLFNIMDTPG---HVNF-------S 217 pevlsslevldlvilvldvedglekdtkeiihhadkygvpillvgnkidl ev+++l++ d+v+l +d+ +g++ t+ +i+ha + + + +nkid KIAA0031 218 DEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDR 267 kdekpgyfvdlkphlaslfaklngephfiplsaetgkgidslfglvea<- ++ + ++ +h++ + + + + +l+++ KIAA0031 268 LI---------LELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILS 306 * KIAA0031 - - //