hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15212798/chunk_1/iprscan-20080501-15212798.nocrc
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Query sequence: KIAA0028
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00396 leuS_bact: leucyl-tRNA synthetase             887.1   2.7e-264   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00396   1/1      55   903 ..     1   916 []   887.1 2.7e-264

Alignments of top-scoring domains:
TIGR00396: domain 1 of 1, from 55 to 903: score 887.1, E = 2.7e-264
                   *->YnhieIEkKWQqkWaenktfkttdDPisnkpKyYiLsMFPYPSGaGL
                         +  Ek W q+ +e  ++  + D  ++kpK+Y+LsMFPYPSG  L
    KIAA0028    55    QTRKDVEKWWHQRIKEQASKISEAD--KSKPKFYVLSMFPYPSGK-L 98   

                   HmGHVRnYTItDvlsRYkrmkGyNVLHPmGwDAFGLPAEnAAIkrgihPa
                   HmGHVR+YTI+D ++R+++m G +V+ PmGwDAFGLPAEnAA++r+ hP+
    KIAA0028    99 HMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAVERNLHPQ 148  

                   kWTyeNIanmkkQlqaLGFsyDWdREiaTcdPeYYKwTQWiFleLfekGL
                   +WT  NI  m+kQl  LG+ ++WdREi+Tc P+YYKwTQ +F++L+e+GL
    KIAA0028   149 SWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGL 198  

                   AYvKeatVNWCPnDgTVLANEqViiDSdGNarSWRggtpVEkKelkQWfL
                   AY+Kea VNW+P+D+TVLANEqV  D  G  +SWR+g++VE+K+l+QWf+
    KIAA0028   199 AYQKEALVNWDPVDQTVLANEQV--DEHG--CSWRSGAKVEQKYLRQWFI 244  

                   KITaYAeeLLndLeeLdDhWPesVKeMQrNWIGkSeGveitFkiaDhCLk
                   K TaYA +  + L+ L+  W   +K MQ +WIG  +G ++ F ++ h   
    KIAA0028   245 KTTAYAKAMQDALADLP-EW-YGIKGMQAHWIGDCVGCHLDFTLKVH--- 289  

                   aCnkkekiaVFTTRPDTiFGVTYlalApeHpLvekiaknnpkeevaaFik
                        ek++ +T  P+ i+G + +a++p+H L        +   +++ + 
    KIAA0028   290 GQATGEKLTAYTATPEAIYGTSHVAISPSHRLL----HGHSS--LKEALR 333  

                   kiaqksdlertketkekkGvftgiyAIhPlTgEkIPIwv.AnYVLasYGT
                   +++    + ++ +        t   A++ lT +++P+ + A   L+  G+
    KIAA0028   334 MALV---PGKDCL--------TPVMAVNMLTQQEVPVVIlAKADLE--GS 370  

                   GPsAVMGVPAHDeRDFeFAqkykLpIkvVIdpadadgknlkleqAytedg
                     s + G P     D   Aq+ +L   +VI       ++ +         
    KIAA0028   371 LDSKI-GIPSTSSEDTILAQTLGLAYSEVIETL----PDGT--------- 406  

                   vlvNSststDGvLtKECgefnGLnsseAkeaIikmLekegkGKrkVnYrL
                   +++ Ss           +ef+G++ + A+ a ++++    +G  ++  +L
    KIAA0028   407 ERLSSS-----------AEFTGMTRQDAFLALTQKARGKRVGGDVTSDKL 445  

                   RDWlfSRQRYWGePIPiIhcedggavPvpeedLPVkLPelvnydgsGtge
                    DWl+SRQRYWG+PIPi+hc  +g++Pvp edLPV+LP ++ + g+G   
    KIAA0028   446 KDWLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVTLPNIASFTGKG--G 493  

                   SPLsrikeWvnVtcpscgkpAlRETdTMDtFigSSWYYLRYldPknNtnF
                   +PL+   eWvn  cp c   A+RETdTMDtF +S WYY+RY+dP+ N+  
    KIAA0028   494 PPLAMASEWVNCSCPRCKGAAKRETDTMDTFVDSAWYYFRYTDPH-NP-- 540  

                   WPIdqpfdkekaeywLPVDlYIGGiEHAiLHLLYaRFfhKfLyDlglvst
                       +pf+   a+yw+PVDlYIGG EHA++HL YaRFf  f  D ++v  
    KIAA0028   541 ---HSPFNTAVADYWMPVDLYIGGKEHAVMHLFYARFFSHFCHDQKMVKH 587  

                   PAGikEPFkKLinQGMVLgdafyYkkpnGkriWvvPadelierdekgdik
                        EPF KL+ QG + g   +   p+G    ++   e+          
    KIAA0028   588 ----REPFHKLLAQGLIKG--QTFRLPSGQ---YLQREEVDLTGS----- 623  

                   kakDksggelvvvgyeKMSKSKgNgidPqeivkkyGADalRLfimFmgPi
                    +  ++ +e + v  eKMSKSK Ng+dP e+v+ yG D+ RL+i+F++P+
    KIAA0028   624 VPVHAKTKEKLEVTWEKMSKSKHNGVDPEEVVEQYGIDTIRLYILFAAPP 673  

                   aasLeWn..esgleGarRFLdRVwnLvkeilgelsgiisavRPkt.elte
                   ++++ W+ ++++l G+ R+ +R+w L++  +   +   s   P +++l +
    KIAA0028   674 EKDILWDvkTDALPGVLRWQQRLWTLTTRFIEARA---SGKSPQPqLLSN 720  

                   taleeaqkelrrevhkflKkvtEdleklelsFNTaISamMellNaLykat
                   + + ea k  +++ + ++  vt ++  + +s+N aIS++M l+NaL+ a+
    KIAA0028   721 KEKAEARKLWEYK-NSVISQVTTHFTED-FSLNSAISQLMGLSNALSQAS 768  

                   kdge.dralyleylkglvtvLsPfaPHlaEELwekLgsep..........
                   +      +    +l +l  + +P aPH + E w+ L + p++   + + +
    KIAA0028   769 QSVIlHSPEFEDALCALMVMAAPLAPHVTSEIWAGLALVPrklcahytwd 818  

                   .siikqakwpkvDetalveDkKveiVvqvNGKvmYrakitvpkda..dee
                    s+  qa wp+vD+  l   + v+  v +N K    +ki vp  + +d +
    KIAA0028   819 aSVLLQA-WPAVDPEFLQQPEVVQMAVLINNKA--CGKIPVPQQVarDQD 865  

                   qveelAkadeevkkyLenktIkKVIyVp.gKLvNfVik<-*
                    v e   ++e++ + L + +IkK +  p+  L+Nf++    
    KIAA0028   866 KVHEFVLQSELGVRLLQGRSIKKSFLSPrTALINFLVQ    903  

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