hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15212798/chunk_1/iprscan-20080501-15212798.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0028 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09334.1.fs tRNA synthetases class I (M) 75.5 2.5e-23 2 PF00133.12.fs tRNA synthetases class I (I, L, M and V) 75.8 7.1e-21 5 PF09334.1.ls tRNA synthetases class I (M) -120.5 1e-11 1 PF00133.12.ls tRNA synthetases class I (I, L, M and V) -227.2 1.7e-09 1 PF08264.3.ls Anticodon-binding domain 17.0 9.1e-07 1 PF08264.3.fs Anticodon-binding domain 19.9 3.3e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00133.12.ls 1/1 59 680 .. 1 724 [] -227.2 1.7e-09 PF09334.1.fs 1/2 85 167 .. 1 85 [. 41.4 7.3e-13 PF09334.1.ls 1/1 85 678 .. 1 422 [] -120.5 1e-11 PF00133.12.fs 4/5 447 462 .. 492 507 .. 19.2 2.3e-05 PF09334.1.fs 2/2 639 677 .. 355 395 .. 34.1 1.2e-10 PF00133.12.fs 5/5 640 680 .. 647 724 .] 35.1 1e-09 PF08264.3.ls 1/1 726 872 .. 1 176 [] 17.0 9.1e-07 PF08264.3.fs 1/1 781 847 .. 83 151 .. 19.9 3.3e-05 Alignments of top-scoring domains: PF00133.12.ls: domain 1 of 1, from 59 to 680: score -227.2, E = 1.7e-09 *->qiyefW...deqgyFkkslenrKgskpsFvlhDGPPnATGllHiGHA + ++W++++++ + k s e++K kp+F P+ G+lH+GH+ KIAA0028 59 DVEKWWhqrIKEQASKIS-EADKS-KPKFYVLSMFPYPSGKLHMGHV 103 LnktLKDiviRykrmqGfdvlwvpGwDhHGLPiE.lkVEkKLGikekkdr t+ D+++R++ m G v GwD GLP E+++VE+ L ++ KIAA0028 104 RVYTISDTIARFQKMRGMQVINPMGWDAFGLPAEnAAVERNL-HPQS--- 149 hklGrekFrekCrewkaeyadeirsqfkrLGvsvDwdreYfTLdpeleaa w +++ r+q rLG+ wdre T p + + KIAA0028 150 --------------WTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKW 185 vwrvFveLhdkGLiYRGkKvVnWspklnTALSeaEVqQeYKDvkRTLLdV + F +L++ GL Y + +VnW+p ++T+L++ V D KIAA0028 186 TQYLFIKLYEAGLAYQKEALVNWDPVDQTVLANEQV-----DEH------ 224 PGYDkKVEFdpsihvaFplaDdakladgkgvkdvdspaslviWTTTPWTL + s+ ++ + + + i TT KIAA0028 225 ---------GCSWRSGAKV------EQKYL-------RQWFIKTT----- 247 pgNtAvAVnPefnYvkvkDavtgellILAeaLleslykkkkeskyiIled A ++ ++ ++ + l++ y k+ + ++d KIAA0028 248 ------AYAKAMQDALAD--------------LPEWYGIKGMQAHW-IGD 276 frgkeLegkkyihPFpYFlsdkldReipiiaddyVdmef..GTGaVHiAP g +L + h + + + +++ + e+ GT V i+P KIAA0028 277 CVGCHLDFTLKVHGQ------ATGEKLTAYTA---TPEAiyGTSHVAISP 317 AH...................GedDYevGkkhnLIskddefinpv...dd H+ +++++ ++ + +G d ++ n+ + +++++ + d KIAA0028 318 SHrllhghsslkealrmalvpGKDCLTPVMAVNMLTQQEVPVVILakaDL 367 dGtyneeaviTGra.glypseilpeFqGlkrFkAdkkIvelL...kEkGl +G ++ G ++ + +il++ Gl + +++e+L++++E+ KIAA0028 368 EGSLDSKI---GIPsTSSEDTILAQTLGLAY----SEVIETLpdgTER-- 408 LlkiekieHsYPhCWRsgtPiiyratpQWFVrmkeeklqGktLredalka L +++++ m+ ++ l KIAA0028 409 LSSSAEFT-----------------------GMTR--------QDAFLAL 427 vedGkvqfvPksigekrygnWle..NiqDWCISRQRwWGhPIPawyskdt + k + kr g + ++ DW ISRQR+WG+PIP+ + + KIAA0028 428 TQ--------KA-RGKRVGGDVTsdKLKDWLISRQRYWGTPIPIVHCPVC 468 gEvyvreelkelvagreeeegeeawlhrdakdlLT............... g + + e+ ++ + +T++++++ ++ + KIAA0028 469 G---P-----------TPVPLEDLPVTLPNIASFTgkggpplamasewvn 504 ipSgkgagtLeqdeDVLDvWFdSGswpf.....svlgwPftntkefkkff +++ ++g ++++D++D+ dS+ f+ ++++ ++Pf+ t + KIAA0028 505 CSCPRCKGAAKRETDTMDTFVDSAWYYFrytdpHNPHSPFN-TAVADYWM 553 PADmllEGsD...QtRGW..FysmivlgtaltGsaNGKPQVPYkevLvhG P D+++ G + + + +F s ++ +++ P++ +L G KIAA0028 554 PVDLYIGGKEhavMHLFYarFFSHFCHDQKMVKHR-----EPFHKLLAQG 598 lv.................rDeqG................rKMSKSlGNv l+++++ + ++++ +++++D +G+ + + +++++ + + KMSKS+ N+ KIAA0028 599 LIkgqtfrlpsgqylqreeVDLTGsvpvhaktkeklevtwEKMSKSKHNG 648 IdPldvidGIsLeDLhaKllggnlqpqeveKakkaqkksFPnGIpkyGAD +dP++v++ +yG D KIAA0028 649 VDPEEVVE-------------------------------------QYGID 661 ALRlwLiassdygrDinfS<-* +Rl+++ +++ +Di ++ KIAA0028 662 TIRLYILFAAPPEKDILWD 680 PF09334.1.fs: domain 1 of 2, from 85 to 167: score 41.4, E = 7.3e-13 *->fliTtAlpYvNGppHiGHlyGttipADvyaRYkRLrYGydVlFvtGT f++ + pY++G++H GH++ + + D++aR++++r G++V+ +G KIAA0028 85 FYVLSMFPYPSGKLHMGHVR-VYTISDTIARFQKMR-GMQVINPMGW 129 DEHGtkIelaAekeGvtPqelvDryheefkelfkklnI<-* D G + e aA ++++ Pq ++ + ++ ++ +++l++ KIAA0028 130 DAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGL 167 PF09334.1.ls: domain 1 of 1, from 85 to 678: score -120.5, E = 1e-11 *->fliTtAlpYvNGppHiGHlyGttipADvyaRYkRLrYGydVlFvtGT f++ + pY++G++H GH++ + + D++aR++++r G++V+ +G KIAA0028 85 FYVLSMFPYPSGKLHMGHVR-VYTISDTIARFQKMR-GMQVINPMGW 129 DEHGtkIelaAekeGvtPqelvDryheefkelfkklnIsf..DdFiRTTs D G + e aA ++++ Pq ++ + ++ ++ +++l++ f+ D+ i T KIAA0028 130 DAFGLPAENAAVERNLHPQSWTQSNIKHMRKQLDRLGLCFswDREITTCL 179 erHkeiVqeFflkLyekGdIYegeyegwYCvsderFLpDRyaLvkdndef ++ ++ +q f kLye G+ Y +e + ++ d + L+ + +++ + KIAA0028 180 PDYYKWTQYLFIKLYEAGLAYQKEALVNWDPVDQTVLANEQ-VDEHGCSW 228 GeveGtCPyCgsedARGDqCEvCGrplePteLINPrcaIsGstPevkeee +G+++e + + KIAA0028 229 ---------------------RSGAKVE-------------QKYLRQ--- 241 HyFFrLskfqdk...................................... +F + +++++ ++ + ++ + ++ + + ++ + + + + + ++ KIAA0028 242 -WFIKTTAYAKAmqdaladlpewygikgmqahwigdcvgchldftlkvhg 290 .................................................. + ++++ + + +++ ++++ +++++ +++++ ++ + +++ KIAA0028 291 qatgekltaytatpeaiygtshvaispshrllhghsslkealrmalvpgk 340 .................................................. + ++ + ++++ + + + +++ +++ + ++++++++ ++ KIAA0028 341 dcltpvmavnmltqqevpvvilakadlegsldskigipstssedtilaqt 390 .................................LlewiekenpdfIqpps + ++ ++ ++++++ +++ + ++ ++++ l+ + KIAA0028 391 lglaysevietlpdgterlsssaeftgmtrqdaFLALT---------QKA 431 nvnevvlswlkeGLkDlsITRPRrdldWFGIpVPlegdpgkviYVWfDAL + ++v + + LkD+ I+ r W G p+P KIAA0028 432 RGKRVGGDVTSDKLKDWLIS---RQRYW-GTPIP---------------- 461 igYIsatkylskki.................................... ++ ++ + ++++ + ++ + + ++ + +++++++ ++ KIAA0028 462 -----IVHCP---Vcgptpvpledlpvtlpniasftgkggpplamasewv 503 .................................................. + + ++ ++ ++++++ ++ ++ + +++++++++ ++ + KIAA0028 504 ncscprckgaakretdtmdtfvdsawyyfrytdphnphspfntavadywm 553 ..........................gneeikwkkfWpaddpdteivHfI + + +++++ + + ++ +++ + k+ KIAA0028 554 pvdlyiggkehavmhlfyarffshfcHDQK-MVKHRE------------- 589 GKDIirFHaIyWPAmLmaYnkseaglp...................LPtq +FH L+a +gl ++++ + ++++ ++++ +L KIAA0028 590 -----PFH------KLLA-----QGLIkgqtfrlpsgqylqreevdLTGS 623 vfaH....GwltveGgKMSKSrGnvVdpdelldrGygvDaLRYYLlrKea v++H ++++ l v +KMSKS++n+Vdp+e +++ yg+D R Y+l +a KIAA0028 624 VPVHaktkEKLEVTWEKMSKSKHNGVDPEEVVEQ-YGIDTIRLYILF-AA 671 pegkDgdFSwedfveRvNseLandlGNLlnRtl<-* p kD +l KIAA0028 672 PPEKD--------------------------IL 678 PF00133.12.fs: domain 4 of 5, from 447 to 462: score 19.2, E = 2.3e-05 *->DWCISRQRwWGhPIPa<-* DW ISRQR+WG+PIP+ KIAA0028 447 DWLISRQRYWGTPIPI 462 PF09334.1.fs: domain 2 of 2, from 639 to 677: score 34.1, E = 1.2e-10 *->gKMSKSrGnvVdpdelldrGygvDaLRYYLlrKeapegkDg<-* +KMSKS++n+Vdp+e +++ yg+D R Y+l +ap kD+ KIAA0028 639 EKMSKSKHNGVDPEEVVEQ-YGIDTIRLYILF-AAPPEKDI 677 PF00133.12.fs: domain 5 of 5, from 640 to 680: score 35.1, E = 1e-09 *->KMSKSlGNvIdPldvidGIsLeDLhaKllggnlqpqeveKakkaqkk KMSKS+ N++dP++v++ KIAA0028 640 KMSKSKHNGVDPEEVVE------------------------------ 656 sFPnGIpkyGADALRlwLiassdygrDinfS<-* +yG D +Rl+++ +++ +Di ++ KIAA0028 657 -------QYGIDTIRLYILFAAPPEKDILWD 680 PF08264.3.ls: domain 1 of 1, from 726 to 872: score 17.0, E = 9.1e-07 *->DrWiLsrLnelikevteayen.YdFnkAaralyeFiwndlcdwYlel r ++ n++i +vt+++ +++ +n A+++l+ + n+l+ KIAA0028 726 ARKLWEYKNSVISQVTTHFTEdFSLNSAISQLMGLS-NALSQASQSV 771 sKdrlygeeeegeGsaadddkseapakraAqttLyevLeallrLLaPfmP + + ++ +L al+ ++aP +P KIAA0028 772 ILH---------------SP------------EFEDALCALMVMAAPLAP 794 FitEEiWqrLpg..........eeeSvhladwP.vdelevdgfdeakewe ++t EiW L +++ + + + Sv l++wP vd+ e + KIAA0028 795 HVTSEIWAGLALvprklcahytWDASVLLQAWPaVDP-------E----F 833 lidleklea.emellkevikaiRslRaeknikpsl.plkvliv<-* l+ +++++ ++ + + +++i ++ +++++++++ KIAA0028 834 LQQ-PEVVQmAVLINNKACGKIPVPQ---QVARDQdKVHEFVL 872 PF08264.3.fs: domain 1 of 1, from 781 to 847: score 19.9, E = 3.3e-05 *->vLeallrLLaPfmPFitEEiWqrLpg..........eeeSvhladwP +L al+ ++aP +P++t EiW L +++ + + + Sv l++wP KIAA0028 781 ALCALMVMAAPLAPHVTSEIWAGLALvprklcahytWDASVLLQAWP 827 .vdelevdgfdeakewelidlekleaemellke<-* vd+ e +l+ +++++ m++l++ KIAA0028 828 aVDP-------E----FLQQ-PEVVQ-MAVLIN 847 //