# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00560.fasta.huge -Q ../query/KIAA0028.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0028, 904 aa vs ./tmplib.23147 library 1986601 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.3577+/-0.00491; mu= 19.6862+/- 0.336 mean_var=86.2942+/-20.160, 0's: 0 Z-trim: 2 B-trim: 7 in 1/39 Lambda= 0.138065 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1352 ( 1212 res) fj01313 (1212) 161 42.9 0.00028 KIAA1885 ( 1098 res) fj04812 (1098) 136 37.8 0.0082 >>KIAA1352 ( 1212 res) fj01313 (1212 aa) initn: 295 init1: 114 opt: 161 Z-score: 168.8 bits: 42.9 E(): 0.00028 Smith-Waterman score: 161; 26.374% identity (59.341% similar) in 91 aa overlap (51-140:47-137) 30 40 50 60 70 KIAA00 NGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVE-KWWHQRIKEQASKISEAD .. . .:... :: .:. : .. : . KIAA13 SFVEVARVIVVDLHSRLGGAMAERKGTAKVDFLKKIEKEIQQKWDTERVFEVNASNLEKQ 20 30 40 50 60 70 80 90 100 110 120 130 KIAA00 KSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENA :: :..: .:: .:.::.::. . . . .:...: . :.: :.: . KIAA13 TSKGKYFVTFPYPYMNGRLHLGHTFSLSKCEFAVGYQRLKGKCCLFPFGLHCTGMPIKAC 80 90 100 110 120 130 140 150 160 170 180 190 KIAA00 AVERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGLA : KIAA13 ADKLKREIELYGCPPDFPDEEEEEEETSVKTEDIIIKDKAKGKKSKAAAKAGSSKYQWGI 140 150 160 170 180 190 >>KIAA1885 ( 1098 res) fj04812 (1098 aa) initn: 356 init1: 117 opt: 136 Z-score: 142.4 bits: 37.8 E(): 0.0082 Smith-Waterman score: 315; 21.749% identity (48.677% similar) in 869 aa overlap (63-842:151-947) 40 50 60 70 80 90 KIAA00 VIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQASKISEADKSKPKFY--VLSM :: ..: : : . :. ..:: KIAA18 IPTKPGEKKDVSGPLPPAYSPRYVEAAWYPWW---VREGFFK-PEYQARLPQATGETFSM 130 140 150 160 170 100 110 120 130 140 KIAA00 -FPYP--SGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAVERNL-- .: : .:.::.::. . .:.:...:...::: ::. : : :. : .:.::..: KIAA18 CIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDQVLWVPGSDHAGI-ATQAVVEKQLWK 180 190 200 210 220 230 150 160 170 180 KIAA00 ------HPQS----------WTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYL : : : ... .. .:: :: ..:::: : . KIAA18 ERGVRRHELSREAFLREVWQWKEAKGGEICEQLRALGASLDWDRECFTMDVGSSVAVTEA 240 250 260 270 280 290 190 200 210 220 230 240 KIAA00 FIKLYEAGLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAY :..::.::: :... ::::. . ...... .:... .. .. : . KIAA18 FVRLYKAGLLYRNHQLVNWSCALRSAISDIEVENRPLPGHTQLRLPGCPTPVSFGLLFSV 300 310 320 330 340 350 250 260 270 280 290 KIAA00 AKAMQDALADLPEWYGIKGMQAHWIGDC-VGCHLDFT--LKVHGQAT-----GEKL---T : . :. : : .. :: :. : : . ..::. :. : : KIAA18 AFPV-DGEPDAEVVVGTTRPET-LPGDVAVAVHPDDSRYTHLHGRQLRHPLMGQPLPLIT 360 370 380 390 400 410 300 310 320 330 340 350 KIAA00 AYTATPEAIYGTSHVAISPSHRLLHGHSSLKEALRMALVPGKD------CLTPVMAVNML :.. :.. ::. : ..:.: .. . ...: : ..: : ..... . KIAA18 DYAVQPHV--GTGAVKVTPAHSPADAEMGARHGLSPLNVIAEDGTMTSLCGDWLQGLHRF 420 430 440 450 460 470 360 370 380 390 400 410 KIAA00 TQQEVPVVILAKADL-EGSLDSKIGIPSTSSEDTILAQTLGLAYSEVIETLPDGTERLSS . .: . .:.. : .: . . .: : .. : . .. :. : .. KIAA18 VAREKIMSVLSEWGLFRGLQNHPMVLPICSRSGDVIEYLLKNQW--FVRCQEMGA-RAAK 480 490 500 510 520 420 430 440 450 460 KIAA00 SAEFTGMTRQDAFLALTQKARGKRVGGDVTSDKLKDWLISRQRYWGTPIP---IVH---- ..: .. . .: . . ...: :: .::: .:: :: .:. KIAA18 AVESGALELSPSFHQKNWQHWFSHIG---------DWCVSRQLWWGHQIPAYLVVEDHAQ 530 540 550 560 570 470 480 490 500 510 520 KIAA00 ----CPVCGPTPVPLEDLPVTLPNIASFTGKGGPPLAMASEWVNCSCPRCKGAAKRETDT : : : . . ... : .::. : :.. .:. :. KIAA18 GEEDCWVVGRSEAEAREVA------AELTGRPGAELTL----------------ERDPDV 580 590 600 610 530 540 550 560 570 580 KIAA00 MDTFVDSAWYYFRYTDPHNPHSPFNTAVADYWMPVDLYIGGKEHAVMHLFYARFFSHFCH .::. .:: . : : .: ..:..: :.. . ::.. ... KIAA18 LDTWFSSALFPFSALGW-----PQETPDLARFYPLSLLETGSD---LLLFWV---GRMVM 620 630 640 650 660 590 600 610 620 630 KIAA00 DQKMVKHREPFHKLLAQGLIKGQTFRLPSGQYLQREEVDLTGSV--PVHAKTKEKLEVTW .. . :: :.: . ... . .:. ... :.: : . ...: KIAA18 LGTQLTGQLPFSKVLLHPMVRDR-----QGRKMSKS----LGNVLDPRDIISGVEMQVLQ 670 680 690 700 710 640 650 660 670 680 KIAA00 EKMSKSKHNGVDPEEV--------------VEQYGIDTIRLYILFAAPPEKDILWDVKTD ::. . ...:: :. . . : :..:. . . :. .:. KIAA18 EKL---RSGNLDPAELAIVAAAQKKDFPHGIPECGTDALRFTLCSHGVQAGDLHLSVSE- 720 730 740 750 760 770 690 700 710 720 730 740 KIAA00 ALPGVLRWQQRLWTLTTRFIEARASGKS--PQP-QLLSNKEKAEARKLWEYKNSVISQVT . . .. ...:. . ::: : :.. ::: . :: . .: : . .. KIAA18 -VQSCRHFCNKIWN-ALRFI-LNALGEKFVPQPAEELSPSSPMDAWILSRLALAAQECER 780 790 800 810 820 830 750 760 770 780 790 KIAA00 THFTEDFSLNS-AISQ--LMGLSNALSQASQSVILHSPEF---EDAL--CALM--VMAAP .:...:: . :. . : .: .. .: . :. :::. ..: :: . . :: KIAA18 GFLTRELSLVTHALHHFWLHNLCDVYLEAVKPVLWHSPRPLGPPQVLFSCADLGLRLLAP 840 850 860 870 880 890 800 810 820 830 840 KIAA00 LAPHVTSEIWAGLALVPRKLCAHYT------WDASVLLQAW--PAVDPEFLQQPEVVQMA : : .. :.: : :: : . .. :. : : .. .: . ::::. KIAA18 LMPFLAEELWQRLP--PRPGCPPAPSISVAPYPSACSLEHWRQPELERRFSRVQEVVQVL 900 910 920 930 940 850 860 870 880 890 900 KIAA00 VLINNKACGKIPVPQQVARDQDKVHEFVLQSELGVRLLQGRSIKKSFLSPRTALINFLVQ KIAA18 RALRATYQLTKARPRVLLQSSEPGDQGLFEAFLEPLGTLGYCGAVGLLPPGAAAPSGWAQ 950 960 970 980 990 1000 904 residues in 1 query sequences 1986601 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:10 2008 done: Thu Dec 18 15:05:11 2008 Total Scan time: 0.630 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]