hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15144130/chunk_1/iprscan-20080501-15144130.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0025 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00213 60.5 2.2e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00213 1/1 41 118 .. 1 72 [] 60.5 2.2e-13 Alignments of top-scoring domains: SM00213: domain 1 of 1, from 41 to 118: score 60.5, E = 2.2e-13 *->ieltvktldgektitlevkpsd.wTVselKekiaelegi.Ppeq.Qr ++l vk++++ ++ +le++ + +w+V +lK+++ +++ +P+ ++Qr KIAA0025 41 VTLLVKSPNQ-RHRDLELSGDRgWSVGHLKAHLSRVYPErPRPEdQR 86 LiyaGk.LeDd.tLaeygiqdgs..tihlvlr<-* Liy+Gk L D+++L++++ ++++++++hlv+ KIAA0025 87 LIYSGKlLLDHqCLRDLLPKQEKrhVLHLVCN 118 //