hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15111010/chunk_1/iprscan-20080501-15111010.nocrc
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Query sequence: KIAA0023
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  29.6    0.00042   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/2     156   196 ..     1    46 []     8.5       22
SM00320    2/2     200   238 ..     1    46 []    21.1     0.15

Alignments of top-scoring domains:
SM00320: domain 1 of 2, from 156 to 196: score 8.5, E = 22
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +    + lk   g   V +++++p+      p+++a++  Dg+i + 
    KIAA0023   156    PfAYHKLLKDAGG--MVIDMKWNPTV-----PSMVAVCLaDGSIAVL 195  

                   d<-*
                       
    KIAA0023   196 Q    196  

SM00320: domain 2 of 2, from 200 to 238: score 21.1, E = 0.15
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t k+++tl+  t   +Vtsv++sp g      ++la+g ++gt+  +
    KIAA0023   200    TvKVCATLP-STV--AVTSVCWSPKG------KQLAVGKqNGTVVQY 237  

                   d<-*
                       
    KIAA0023   238 L    238  

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