hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15041821/chunk_1/iprscan-20080501-15041821.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0019 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00164 276.3 2.4e-78 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00164 1/1 107 325 .. 1 310 [] 276.3 2.4e-78 Alignments of top-scoring domains: SM00164: domain 1 of 1, from 107 to 325: score 276.3, E = 2.4e-78 *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd ++kG+p +lRgeVW lLl++++m+ + KIAA0019 107 IYKGIPLQLRGEVWALLLEIPKMKEET-------------------- 133 rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl +d+Ys+l++++ +++ ++ KIAA0019 134 --RDLYSKLKHRARGCSPDI------------------------------ 151 dqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl qI++D++Rtf+++++F r+r+ g++q+sL++vL aYs+ KIAA0019 152 RQIDLDVNRTFRDHIMF--RDRY-----------GVKQQSLFHVLAAYSI 188 ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk yn+e vgYcQGm+ ++a+LL++m +EedAFw++vkL++ + KIAA0019 189 YNTE--VGYCQGMSQITALLLMYM---NEEDAFWALVKLFSGP------- 226 dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqsk.kkhvdk ++ ++g++ + + +++e+++++ +++++ k k+h+d+ KIAA0019 227 ------KHAMHGFFVQGFPKLLRFQEHHEKILNKFLS-----KlKQHLDS 265 leidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkial +ei +s+y++ Wf+++F + P+ + lRiwD++ +e g+++l +++ KIAA0019 266 QEIYTSFYTMKWFFQCFLDRTPFTLNLRIWDIYIFE----GERVLTAMSY 311 aiLklnedkllkld<-* +iLkl++++l+kl KIAA0019 312 TILKLHKKHLMKLS 325 //