hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15005834/chunk_1/iprscan-20080501-15005834.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0017 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03178.5.ls CPSF A subunit region 515.0 7.6e-152 1 PF03178.5.fs CPSF A subunit region 513.1 2.9e-151 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03178.5.fs 1/1 896 1195 .. 1 334 [] 513.1 2.9e-151 PF03178.5.ls 1/1 896 1195 .. 1 334 [] 515.0 7.6e-152 Alignments of top-scoring domains: PF03178.5.fs: domain 1 of 1, from 896 to 1195: score 513.1, E = 2.9e-151 *->ekevssirlidpntfevihdAsheFeqnEaalSvasvklsneettkd ++++s ir+++p+++++++ +++eqnEaa+Sva++++sn+++ KIAA0017 896 GQWASVIRVMNPIQGNTLD--LVQLEQNEAAFSVAVCRFSNTGE--- 937 kntYlvVGTainypeeietvPsrGrilvFevieVVPePGkPetgnKLklv + +Y++VG+a ++ +++++v G+++++++ + +g+KL+++ KIAA0017 938 D-WYVLVGVAKDLILNPRSV-AGGFVYTYKLVN---------NGEKLEFL 976 aetevkGsVyalcefnGrllagiGqkvriydlteskknekeLrkesfidt ++t+v+++++a+ +f+Gr+l+g+G+ +r+ydl++ +k+Lrk++++++ KIAA0017 977 HKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGK----KKLLRKCENKHI 1022 piyildikvrgnfIlvaDvmkSvslLrykeeegqlievARDtnplwvtsv +yi i+++g++++v+Dv++S++++ryk++e+qli++A+Dt+p+wvt++ KIAA0017 1023 ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTA 1072 efLdddtnLyflgaDasgNlfvlrydpeapeevdedptesKliwdrGlts ++Ld+dt ++gaD++gN++v+r++p++++evdedpt++K++wdrGl++ KIAA0017 1073 SLLDYDT---VAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN 1119 lerqkLesvgdFHlGetvnsmqhgslvmknlgdsygydtgaspsllfgTv +++qk e+++++H+Getv s+q+++l+ +g s+sl+++T+ KIAA0017 1120 GASQKAEVIMNYHVGETVLSLQKTTLI-----------PGGSESLVYTTL 1158 dGaIGvivpliseedyrfLlqLqnaLrkvipslgGld<-* +G+IG++vp++s+ed++f+++++++Lr+++p+l+G+d KIAA0017 1159 SGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRD 1195 PF03178.5.ls: domain 1 of 1, from 896 to 1195: score 515.0, E = 7.6e-152 *->ekevssirlidpntfevihdAsheFeqnEaalSvasvklsneettkd ++++s ir+++p+++++++ +++eqnEaa+Sva++++sn+++ KIAA0017 896 GQWASVIRVMNPIQGNTLD--LVQLEQNEAAFSVAVCRFSNTGE--- 937 kntYlvVGTainypeeietvPsrGrilvFevieVVPePGkPetgnKLklv + +Y++VG+a ++ +++++v G+++++++ + +g+KL+++ KIAA0017 938 D-WYVLVGVAKDLILNPRSV-AGGFVYTYKLVN---------NGEKLEFL 976 aetevkGsVyalcefnGrllagiGqkvriydlteskknekeLrkesfidt ++t+v+++++a+ +f+Gr+l+g+G+ +r+ydl++ +k+Lrk++++++ KIAA0017 977 HKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGK----KKLLRKCENKHI 1022 piyildikvrgnfIlvaDvmkSvslLrykeeegqlievARDtnplwvtsv +yi i+++g++++v+Dv++S++++ryk++e+qli++A+Dt+p+wvt++ KIAA0017 1023 ANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTA 1072 efLdddtnLyflgaDasgNlfvlrydpeapeevdedptesKliwdrGlts ++Ld+dt ++gaD++gN++v+r++p++++evdedpt++K++wdrGl++ KIAA0017 1073 SLLDYDT---VAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLN 1119 lerqkLesvgdFHlGetvnsmqhgslvmknlgdsygydtgaspsllfgTv +++qk e+++++H+Getv s+q+++l+ +g s+sl+++T+ KIAA0017 1120 GASQKAEVIMNYHVGETVLSLQKTTLI-----------PGGSESLVYTTL 1158 dGaIGvivpliseedyrfLlqLqnaLrkvipslgGld<-* +G+IG++vp++s+ed++f+++++++Lr+++p+l+G+d KIAA0017 1159 SGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRD 1195 //