hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14592264/chunk_1/iprscan-20080501-14592264.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0016 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02064.6.fs MAS20 protein import receptor 31.9 1.2e-08 1 PF02064.6.ls MAS20 protein import receptor -9.0 3.4e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02064.6.ls 1/1 30 175 .. 1 184 [] -9.0 3.4e-05 PF02064.6.fs 1/1 32 89 .. 1 62 [. 31.9 1.2e-08 Alignments of top-scoring domains: PF02064.6.ls: domain 1 of 1, from 30 to 175: score -9.0, E = 3.4e-05 *->MsqSnavlrtlAivaAvAalsalaYAvYFDYkRRNdPeFRkvLRrrA + v r Ai a v +++Y +YFD kRR dP F LR r KIAA0016 30 VV-EKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERR 75 krQAkqEkeakelakevklQkvrefldmElkkdgiPsdsdEkEAyFlenV k+Q k ke + l+ k ++ d E+ + Fle++ KIAA0016 76 KKQ-KLAKERAGLS------KLPDLKDAEAVQK-----------FFLEEI 107 eaGEiLsqdqtKeldAalkFYKALkVYPtPaDLlsIYdksvakaIldili + GE L q+ A V +P Ll + +++ + +++ +l KIAA0016 108 QLGEEL-LAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLL 156 lMIAilPslkvasnyvkGVvvaklerdavaeanvilD<-* k + + v++ D KIAA0016 157 --------TKLPT----------ISQRIVSAQSLAED 175 PF02064.6.fs: domain 1 of 1, from 32 to 89: score 31.9, E = 1.2e-08 *->MsqSnavlrtlAivaAvAalsalaYAvYFDYkRRNdPeFRkvLRrrA + v r Ai a v +++Y +YFD kRR dP F LR r KIAA0016 32 ---EKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERR 75 krQAkqEkeakelak<-* k+Q k ke + l+k KIAA0016 76 KKQ-KLAKERAGLSK 89 //