# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00478.fasta.huge -Q ../query/KIAA0015.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0015, 480 aa
 vs ./tmplib.23147 library

1987025 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.6380+/-0.0066; mu= 13.7294+/- 0.449
 mean_var=149.7001+/-36.271, 0's: 0 Z-trim: 2  B-trim: 80 in 1/39
 Lambda= 0.104825

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1072  ( 759 res)   hj06360                     ( 759) 1130 182.5 8.8e-47


>>KIAA1072  ( 759 res)   hj06360                          (759 aa)
 initn: 1163 init1: 1070 opt: 1130  Z-score: 931.8  bits: 182.5 E(): 8.8e-47
Smith-Waterman score: 1244;  47.124% identity (70.354% similar) in 452 aa overlap (39-477:106-541)

       10        20        30        40        50        60        
KIAA00 AWRPSCPGLAAGPRDALGMSSGAPQKSSPMASGAEETPGFLDTLLQDFPALLNPEDPLPW
                                     :. :  .::   . .   :  : :  ::: 
KIAA10 TVAATEEGDQEQDPEPEEEAAVEGEEEEEGAATAAAAPG--HSAVPPPPPQLPPLPPLP-
          80        90       100       110         120       130   

       70        80        90       100       110       120        
KIAA00 KAPGTVLSQEEVEGELAELAMGFLGSRKAPPPLAAALAHEAVSQLLQTDLSEFRKLPREE
       .  .  ...::::::  .: .  : . . :  ::::::. . ...::.:::    .:.: 
KIAA10 RPLSERITREEVEGESLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDLSAHY-IPKE-
            140       150       160       170       180        190 

      130       140       150       160       170       180        
KIAA00 EEEEEDDDEEEKAPVTLLDAQSLAQSFFNRLWEVAGQWQKQVPLAARASQRQWLVSIHAI
             :  :  . .   .. .::.: :..: :.  .: :. ::  :  :  . .:::::
KIAA10 -----TDGTEGTVEI---ETVKLARSVFSKLHEICCSWVKDFPLR-RRPQLYYETSIHAI
                   200          210       220        230       240 

      190       200       210       220       230       240        
KIAA00 RNTRRKMEDRHVSLPSFNQLFGLSDPVNRAYFAVFDGHGGVDAARYAAVHVHTNAARQPE
       .: ::::::.:: .:.::.::.: :  ..::::::::::::::: ::..:.:.: .::  
KIAA10 KNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEM
             250       260       270       280       290       300 

      250       260       270       280       290       300        
KIAA00 LPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQ
       .: ::  :: .::: ::. :..:: :: :. ::::: ..: :  :::::.:::::.::..
KIAA10 FPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRK
             310       320       330       340       350       360 

      310       320       330       340       350       360        
KIAA00 GQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEAD
       ::.:.::.::.:.:.::: ::::::: :  .  :::::.:.:::::::. .:::. :.::
KIAA10 GQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDAD
             370       380       390       400       410       420 

      370       380       390       400       410       420        
KIAA00 AASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVAAARERGS
       .:: .: :.::::.::::::.:.:  .:.: .:..:: ...:..  ::..:::.::. ::
KIAA10 SASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGS
             430       440       450       460       470       480 

      430       440                    450       460       470     
KIAA00 HDNITVMVVFLRD-------------PQELLEGGNQGEGDPQAEGRRQDLPSSLPEPETQ
        :::::.::::::              .. ..::..  :: . .  .   :   :. . .
KIAA10 SDNITVIVVFLRDMNKAVNVSEESDWTENSFQGGQEDGGDDKENHGECKRP--WPQHQCS
             490       500       510       520       530           

         480                                                       
KIAA00 APPRS                                                       
       ::                                                          
KIAA10 APADLGYDGRVDSFTDRTSLSPGSQINVLEDPGYLDLTQIEASKPHSAQFLLPVEMFGPG
     540       550       560       570       580       590         




480 residues in 1 query   sequences
1987025 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:04:44 2008 done: Thu Dec 18 15:04:44 2008
 Total Scan time:  0.440 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]