hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14523948/chunk_1/iprscan-20080501-14523948.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0012
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00255                                                 159.3    3.8e-43   1
SM00082                                                  60.4    2.3e-13   1
SM00369                                                  35.4    7.9e-06   4
SM00364                                                  25.1     0.0097   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/4      71    94 ..     1    24 []    12.4       13
SM00369     2/4     116   140 ..     1    24 []     1.0  3.1e+02
SM00364     1/3     374   393 ..     1    20 []     5.4  1.2e+02
SM00369     3/4     374   397 ..     1    24 []     8.8       35
SM00364     2/3     447   466 ..     1    20 []     5.6  1.2e+02
SM00364     3/3     470   489 ..     1    20 []    14.2      8.7
SM00369     4/4     470   494 ..     1    24 []    13.2       10
SM00082     1/1     527   581 ..     1    55 []    60.4  2.3e-13
SM00255     1/1     639   782 ..     1   147 []   159.3  3.8e-43

Alignments of top-scoring domains:
SM00369: domain 1 of 4, from 71 to 94: score 12.4, E = 13
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr L  s+N ++ L   +F     
    KIAA0012    71    LSKLRILIISHNTIQYLDISVFKF    94   

SM00369: domain 2 of 4, from 116 to 140: score 1.0, E = 3.1e+02
                   *->LpnLreLdLsnNqLtsLP..pgaFqg<-*
                       +nL++LdLs+N++ +LP   + F++   
    KIAA0012   116    TVNLKHLDLSFNAFDALPicKE-FGN    140  

SM00364: domain 1 of 3, from 374 to 393: score 5.4, E = 1.2e+02
                   *->PpsLkeLnvsnNrLteLPeL<-*
                        +L++L  + N+L+eL+     
    KIAA0012   374    LTELETLILQMNQLKELSKI    393  

SM00369: domain 3 of 4, from 374 to 397: score 8.8, E = 35
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L L+ NqL++L   a      
    KIAA0012   374    LTELETLILQMNQLKELSKIAEMT    397  

SM00364: domain 2 of 3, from 447 to 466: score 5.6, E = 1.2e+02
                   *->PpsLkeLnvsnNrLteLPeL<-*
                      Pp++k L+  +N++++ P     
    KIAA0012   447    PPRIKVLDLHSNKIKSIPKQ    466  

SM00364: domain 3 of 3, from 470 to 489: score 14.2, E = 8.7
                   *->PpsLkeLnvsnNrLteLPeL<-*
                       ++L+eLnv +N+Lt+LP     
    KIAA0012   470    LEALQELNVAFNSLTDLPGC    489  

SM00369: domain 4 of 4, from 470 to 494: score 13.2, E = 10
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                      L +L+eL+  +N Lt LP+ g F++   
    KIAA0012   470    LEALQELNVAFNSLTDLPgCGSFSS    494  

SM00082: domain 1 of 1, from 527 to 581: score 60.4, E = 2.3e-13
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NPf C+CeL  ++ +++++++e+l+++ +s++C++Pes+rG+ l ++
    KIAA0012   527    NPFQCTCELGEFVKNIDQVSSEVLEGWPDSYKCDYPESYRGTLLKDF 573  

                   lpsefsCp<-*
                   ++se sC    
    KIAA0012   574 HMSELSCN    581  

SM00255: domain 1 of 1, from 639 to 782: score 159.3, E = 3.8e-43
                   *->eydvFiSfrg.deedvrnefvshLlkalrgkgklcvFiDdfepgggd
                      ++ +FiS++g+d+ +v ne+++ L+k+     ++c+++++f+pg+++
    KIAA0012   639    QFHAFISYSGhDSFWVKNELLPNLEKEGM---QICLHERNFVPGKSI 682  

                   aenkllpelfeaIekSriaivvlSpnYaeSeWCldlElvaalecale.gg
                   +en     ++ +IekS ++i+vlSpn+++SeWC   El +a+++ +++g+
    KIAA0012   683 VEN-----IITCIEKSYKSIFVLSPNFVQSEWCHY-ELYFAHHNLFHeGS 726  

                   lrvIPIfyevi..sdvrkqtgkfgkvfkkngpedtylkwted......fW
                     +I+I +e+i+++ +++   k++ ++ ++    tyl+w++++++++ fW
    KIAA0012   727 NSLILILLEPIpqYSIPSSYHKLKSLMARR----TYLEWPKEkskrglFW 772  

                   kkalysvpnk<-*
                    ++++++ +k   
    KIAA0012   773 ANLRAAINIK    782  

//