hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14505149/chunk_1/iprscan-20080501-14505149.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0011 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 71.9 7.9e-17 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/4 469 525 .. 1 46 [] 10.7 9.9 SM00320 2/4 547 597 .. 1 46 [] 14.4 2.6 SM00320 3/4 615 655 .. 1 46 [] 35.9 5.4e-06 SM00320 4/4 838 878 .. 1 46 [] 10.9 9.3 Alignments of top-scoring domains: SM00320: domain 1 of 4, from 469 to 525: score 10.7, E = 9.9 *->t.kllrtlkgHtgespVtsvafspdggss...........dspnlla ++ + + +g +++++f+p+g + ++++++ + + lla KIAA0011 469 RaHFVYGIACDNG--CIWDLKFCPSGAWElpgtprkapllPRLGLLA 513 sgs.DgtirlWd<-* +++Dg++ l++ KIAA0011 514 LACsDGKVLLFS 525 SM00320: domain 2 of 4, from 547 to 597: score 14.4, E = 2.6 *->t.kllrtlk.........gHtgespVtsvafspdggssdspnllasg + ++++tl+ ++ + +++ g ++s+a+ p+ + ++la+g KIAA0011 547 KvQCVATLQvgsmqatdpSECG--QCLSLAWMPTR----PHQHLAAG 587 s.DgtirlWd<-* +g + +W+ KIAA0011 588 YyNGMVVFWN 597 SM00320: domain 3 of 4, from 615 to 655: score 35.9, E = 5.4e-06 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + + + +H++ +V++++++ + +++l+s+++D++i++W KIAA0011 615 KlYPFQCFLAHDQ--AVRTLQWCKAN-----SHFLVSAGsDRKIKFW 654 d<-* d KIAA0011 655 D 655 SM00320: domain 4 of 4, from 838 to 878: score 10.9, E = 9.3 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ +l l+ +++ v+fsp+ ds +l+sg++ g +r+ KIAA0011 838 SqLCLDRLQ--LE--AIHKVRFSPNL---DSYGWLVSGGqSGLVRIH 877 d<-* KIAA0011 878 F 878 //