hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14490968/chunk_1/iprscan-20080501-14490968.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0010 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 442.3 5.7e-130 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 440.4 2.1e-129 1 PF00612.17.fs IQ calmodulin-binding motif 19.3 0.00011 1 PF00612.17.ls IQ calmodulin-binding motif 21.3 0.0032 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00612.17.fs 1/1 49 69 .. 1 21 [] 19.3 0.00011 PF00612.17.ls 1/1 49 69 .. 1 21 [] 21.3 0.0032 PF00632.15.fs 1/1 781 1086 .] 1 351 [] 440.4 2.1e-129 PF00632.15.ls 1/1 781 1086 .] 1 351 [] 442.3 5.7e-130 Alignments of top-scoring domains: PF00612.17.fs: domain 1 of 1, from 49 to 69: score 19.3, E = 0.00011 *->rraaikIQaawRGylaRkryk<-* + ai+IQ+++RGy+ Rk+ KIAA0010 49 LKNAIIIQSFIRGYRDRKQQY 69 PF00612.17.ls: domain 1 of 1, from 49 to 69: score 21.3, E = 0.0032 *->rraaikIQaawRGylaRkryk<-* + ai+IQ+++RGy+ Rk+ KIAA0010 49 LKNAIIIQSFIRGYRDRKQQY 69 PF00632.15.fs: domain 1 of 1, from 781 to 1086: score 440.4, E = 2.1e-129 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe + l + fnP+ g+F +++ l++nP+ + KIAA0010 781 NELLKSGFNPNQGFFK------------TTNEGLLYPNPAAQMLVGD 815 h.lkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkp..vtleDle +++F+ r+lG+Aly++ l+++pF+ +F+ kLL g + +v+++ l+ KIAA0010 816 SfARHYYFLARMLGKALYENMLVELPFAGFFLSKLL--GTSadVDIHHLA 863 svDPelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdp s+DPe+y++L +l++++ d +e+L+L+F+v ++ + KIAA0010 864 SLDPEVYKNLLFLKSYEDD-----------VEELGLNFTVVNND---L-- 897 dasdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeA Ge ++ve Lk +G++IpVT++N++ Y++L+++yrLn++i++++ A KIAA0010 898 -----GEAQVVE-LKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLA 941 FrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYte Fr G+ v+++++L++Fd +E++ Li+G + pi+++dLks+T Y ggY++ KIAA0010 942 FRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSA 991 dsplktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnG d+p +I+ FW+vve+ft+ee++kLL+FvT++sR+Pl+GFk+L+ KIAA0010 992 DHP--VIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY------ 1033 ppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAInee p F+I++ g d +rLPtA+TC+N+L+LP+ Lr+kLl+AI e+ KIAA0010 1034 -PAFCIHNG--GSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAI-EC 1079 teGFgle<-* +GF+l+ KIAA0010 1080 AAGFELS 1086 PF00632.15.ls: domain 1 of 1, from 781 to 1086: score 442.3, E = 5.7e-130 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe + l + fnP+ g+F +++ l++nP+ + KIAA0010 781 NELLKSGFNPNQGFFK------------TTNEGLLYPNPAAQMLVGD 815 h.lkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkp..vtleDle +++F+ r+lG+Aly++ l+++pF+ +F+ kLL g + +v+++ l+ KIAA0010 816 SfARHYYFLARMLGKALYENMLVELPFAGFFLSKLL--GTSadVDIHHLA 863 svDPelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdp s+DPe+y++L +l++++ d +e+L+L+F+v ++ + KIAA0010 864 SLDPEVYKNLLFLKSYEDD-----------VEELGLNFTVVNND---L-- 897 dasdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeA Ge ++ve Lk +G++IpVT++N++ Y++L+++yrLn++i++++ A KIAA0010 898 -----GEAQVVE-LKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLA 941 FrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYte Fr G+ v+++++L++Fd +E++ Li+G + pi+++dLks+T Y ggY++ KIAA0010 942 FRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSA 991 dsplktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnG d+p +I+ FW+vve+ft+ee++kLL+FvT++sR+Pl+GFk+L+ KIAA0010 992 DHP--VIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY------ 1033 ppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAInee p F+I++ g d +rLPtA+TC+N+L+LP+ Lr+kLl+AI e+ KIAA0010 1034 -PAFCIHNG--GSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAI-EC 1079 teGFgle<-* +GF+l+ KIAA0010 1080 AAGFELS 1086 //