hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14472770/chunk_1/iprscan-20080501-14472770.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0009 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05308.2.ls Protein of unknown function (DUF729) 553.1 2.7e-163 1 PF05308.2.fs Protein of unknown function (DUF729) 551.2 9.8e-163 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05308.2.fs 1/1 6 237 .. 1 267 [] 551.2 9.8e-163 PF05308.2.ls 1/1 6 237 .. 1 267 [] 553.1 2.7e-163 Alignments of top-scoring domains: PF05308.2.fs: domain 1 of 1, from 6 to 237: score 551.2, E = 9.8e-163 *->mdsvlwsnKpyGSsRSIVRkIGtnLsLiqcpRvqFqLtshatetesp m+svlws+KpyGSsRSIVRkIGtnLsLiqcpRvqFq++shate++ p KIAA0009 6 MQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHATEWS-P 51 dhsgEdaVaSFADVgwVAkEEgesslRlRsevwsktkkplrddlpffekk +h+gEdaVaSFADVgwVAkEEge+s+RlR+ev+s ++pl+ddl+ffek+ KIAA0009 52 SHPGEDAVASFADVGWVAKEEGECSARLRTEVRS--RPPLQDDLLFFEKA 99 lsrqpSvPgLsqekpepddlplAnEeAlqKIsALEnELaaLRaQIAkIVv +srq+S+P+Lsqe+p++++++lAnEeAlqKI+ALEnELaaLRaQIAkIV+ KIAA0009 100 PSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVT 149 lQeqqnltaggldsltsetVlPssattGlsvePdhapsvpppPPPPPPpl +Qeqqnltag+lds+t++t+ pp+PPPPPPpl KIAA0009 150 QQEQQNLTAGDLDSTTFGTI-------------------PPHPPPPPPPL 180 PplaLqPPssfplqqGsastsaidlikerrerrlsagktlddnhpkKpqr Pp+aL +l+q stsa+dlikerre+r++agktl++n+pkKp KIAA0009 181 PPPAL------GLHQ---STSAVDLIKERREKRANAGKTLVKNNPKKP-- 219 lrdvPNMLeiLKdmNsVKLR<-* ++PNMLeiLK+mNsVKLR KIAA0009 220 --EMPNMLEILKEMNSVKLR 237 PF05308.2.ls: domain 1 of 1, from 6 to 237: score 553.1, E = 2.7e-163 *->mdsvlwsnKpyGSsRSIVRkIGtnLsLiqcpRvqFqLtshatetesp m+svlws+KpyGSsRSIVRkIGtnLsLiqcpRvqFq++shate++ p KIAA0009 6 MQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHATEWS-P 51 dhsgEdaVaSFADVgwVAkEEgesslRlRsevwsktkkplrddlpffekk +h+gEdaVaSFADVgwVAkEEge+s+RlR+ev+s ++pl+ddl+ffek+ KIAA0009 52 SHPGEDAVASFADVGWVAKEEGECSARLRTEVRS--RPPLQDDLLFFEKA 99 lsrqpSvPgLsqekpepddlplAnEeAlqKIsALEnELaaLRaQIAkIVv +srq+S+P+Lsqe+p++++++lAnEeAlqKI+ALEnELaaLRaQIAkIV+ KIAA0009 100 PSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVT 149 lQeqqnltaggldsltsetVlPssattGlsvePdhapsvpppPPPPPPpl +Qeqqnltag+lds+t++t+ pp+PPPPPPpl KIAA0009 150 QQEQQNLTAGDLDSTTFGTI-------------------PPHPPPPPPPL 180 PplaLqPPssfplqqGsastsaidlikerrerrlsagktlddnhpkKpqr Pp+aL +l+q stsa+dlikerre+r++agktl++n+pkKp KIAA0009 181 PPPAL------GLHQ---STSAVDLIKERREKRANAGKTLVKNNPKKP-- 219 lrdvPNMLeiLKdmNsVKLR<-* ++PNMLeiLK+mNsVKLR KIAA0009 220 --EMPNMLEILKEMNSVKLR 237 //