hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080909/iprscan-20080909-09234636/chunk_1/iprscan-20080909-09234636.nocrc
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Query sequence: KIAA0008
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03359.4.ls Guanylate-kinase-associated protein (GKAP) p  -152.4    1.3e-05   1
PF03359.4.fs Guanylate-kinase-associated protein (GKAP) p    15.6     0.0003   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03359.4.ls   1/1     340   637 ..     1   365 []  -152.4  1.3e-05

Alignments of top-scoring domains:
PF03359.4.ls: domain 1 of 1, from 340 to 637: score -152.4, E = 1.3e-05
                   *->EdrskavkkkklsSIGiQVddieesdkkeEsksaskFqSiGVQVEed
                          k++  + l   G      +   +++ ++sa  F          
    KIAA0008   340    ----KDFMFQPLD--GLKTY--QVT-PMT-PRSANAF---------- 366  

                   kRsarFkRSnSvt...aavqADldleDaadsslkstEDksLqpgrtarrq
                        +  S   t+ ++ v+    ++  +   +k    k         +q
    KIAA0008   367 ---LTP--SYTWTplkTEVDESQATKEILAQKCKTYSTKTI-------QQ 404  

                   sseadaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdP
                    s   +     +       +  + l   +          l + +    +P
    KIAA0008   405 DSNKLP----CPLGPLTVWHEEHVLNKNEATTKN-----LNGLPI-KEVP 444  

                   APGPGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGW
                               +e+     a +    +       F  +Lq E+e+L   
    KIAA0008   445 -----------SLERNEGRIAQPHHGVP------YFRNILQSETEKLTSH 477  

                   CkQMerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPd
                   C   +r   e + p +    ir+AVG + LLm   f QF +L ++     
    KIAA0008   478 CFEWDR-KLELDIPDDAKDLIRTAVGQTRLLMKERFKQFEGLVDDCEYKR 526  

                   AfPrPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKe
                        T  DL GFWD+    IEd+  KF  L +L    W+          
    KIAA0008   527 GIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQVNNN-MNHNM 575  

                   EkkaPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAA..Sv
                    k +     KK   g A  ++ +  da+   R  AR RL A K A ++ +
    KIAA0008   576 NKNV---FRKKVVSGIA--SKPKQDDAG---RIAARNRLAAIKNAMreRI 617  

                   RqnSATESAdSIEIYiPEAQTRL<-*
                   Rq    E A S+   iP         
    KIAA0008   618 RQEECAETAVSV---IPKEVDKI    637  

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