# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00171s2.fasta.huge -Q ../query/KIAA0008.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0008, 876 aa vs ./tmplib.23147 library 1986629 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.5456+/-0.00654; mu= 9.5269+/- 0.445 mean_var=176.5400+/-41.801, 0's: 0 Z-trim: 1 B-trim: 13 in 1/39 Lambda= 0.096528 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0964 ( 999 res) hj06154 ( 999) 281 52.1 3.7e-07 >>KIAA0964 ( 999 res) hj06154 (999 aa) initn: 191 init1: 191 opt: 281 Z-score: 220.3 bits: 52.1 E(): 3.7e-07 Smith-Waterman score: 335; 25.056% identity (54.628% similar) in 443 aa overlap (209-629:576-988) 180 190 200 210 220 230 KIAA00 SVRITRSKAKDQMEQTKIDNESDVRAIRPGPRQTSEKKVSDKEKKVVQPVMPTSLRMTRS :: ::. .: .. .. .. : : KIAA09 PPSTGSLSNSRTLPSSSCLVAYKKTPPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDH 550 560 570 580 590 600 240 250 260 270 280 290 KIAA00 ATQAAKQVPRTVSS----TTARKP-VTRAANENEPEGKVPSKGRPAKNVETKPDKGISCK .....: . :: ...: : :::.. ::. : : :.. : ..: . KIAA09 KSEVTSQSGLSNSSDSLDSSTRPPSVTRGGVAPAPEAPEP----PPKHAALKSEQGTLTS 610 620 630 640 650 660 300 310 320 330 340 KIAA00 VDSEENTLNSQTNATSGMNP----DGVLSKMENLPEINTAKIKGKNSFAPKDFMFQPLDG .:. .. .. .. :.. .: . .: :. . ...: .:. : . : KIAA09 SESHPEAAPKRKLSSIGIQERTRRNGSHLSEDNGPKAIDVMAPSSESSVPSHSMSSRRDT 670 680 690 700 710 720 350 360 370 380 390 400 KIAA00 LKTYQVTPMTPRSANAFLTPSYTWTPLKTEVDES--QATKEILAQKCKTYSTKTIQQ-DS . : . . ... :. : : . .: . :: : .. .:. .. .. KIAA09 DSDTQDANDSSCKSSERSLPDCTPHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALEA 730 740 750 760 770 780 410 420 430 440 450 460 KIAA00 NKLPCPLGPLTVWHEEHVLNKNEATTKNLNGLPIKEVPSLERNEGRIAQPHHGVPYFRNI ..:: : : : : :... . : . :. : .: .: .. KIAA09 SSLP-PPDP---WLE---------TSSSSPAEPAQ--PGACRRDGY---------WFLKL 790 800 810 470 480 490 500 510 520 KIAA00 LQSETEKLTSHCFEWDRKL-ELDIPDDAKDLIRTAVGQTRLLMKERFKQFEGLVDDCEYK ::.:::.: . : . :.. : .. ... . .:::...:::...:.::.:: .. KIAA09 LQAETERLEGWCCQMDKETKENNLSEEVLGKVLSAVGSAQLLMSQKFQQFRGLCEQNLNP 820 830 840 850 860 870 530 540 550 560 570 580 KIAA00 RGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ-VNNNMNHNMNKN----VF . . : :: ::::.....:::. ::..: .:. ..:: :.. ... .:. : KIAA09 DANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEKKPPPPVP 880 890 900 910 920 930 590 600 610 620 630 KIAA00 RKKVVSGIA-SKPKQDDAG---RIAARNRLAAIKNAMRERIRQEECAETAVSVIPKEVDK .: . : : :. : .::. : ::.:: : : : .::. .:.: :. KIAA09 KKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAA--SVRQNSATESADSIEIYVPEA 940 950 960 970 980 990 640 650 660 670 680 690 KIAA00 IVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNEMGIPQQTTSPENA KIAA09 QTRL 876 residues in 1 query sequences 1986629 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:04:28 2008 done: Thu Dec 18 15:04:29 2008 Total Scan time: 0.620 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]