# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha00008.fasta.huge -Q ../query/KIAA0001.ptfa ./tmplib.22663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0001, 347 aa
 vs ./tmplib.22663 library

1987158 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.5545+/-0.0037; mu= 17.0013+/- 0.253
 mean_var=60.0760+/-13.864, 0's: 0 Z-trim: 4  B-trim: 0 in 0/40
 Lambda= 0.165472

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1540  ( 424 res)   fj00652                     ( 424)  196 55.6 5.5e-09


>>KIAA1540  ( 424 res)   fj00652                          (424 aa)
 initn: 134 init1:  91 opt: 196  Z-score: 253.2  bits: 55.6 E(): 5.5e-09
Smith-Waterman score: 216;  19.444% identity (56.481% similar) in 324 aa overlap (24-328:66-373)

                      10        20        30        40        50   
KIAA00        EASAFRSYKMINSTSTQPPDESCSQNLLITQQIIPVLYCMVFIAGILLNGVSG
                                     :::  .   .: : : .... ... : .  
KIAA15 VPNASHFFSWNNYTFSDWQNFVGRRRYGAESQNPTVKALLI-VAYSFIIVFSLFGNVLVC
          40        50        60        70         80        90    

            60         70        80         90       100       110 
KIAA00 WIFFYVPSSKSFI-IYLKNIVIADFVMSL-TFPFKILGDSGLGPWQLNVFVCRVSAVLFY
        ..:     .:   ... :...::....: . :: ..   . . : ..  .:.::    :
KIAA15 HVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVN-STWIFGKGMCHVSRFAQY
          100       110       120       130        140       150   

             120       130       140       150       160           
KIAA00 VNMYVSIVFFGLISFDRYYKIVKPLWTSFIQSVSYSKLLSVIVWMLMLLLAVPNII----
        ...:: . .  :. ::.  :..::   .  :.. . .  ...: .  ....:. :    
KIAA15 CSLHVSALTLTAIAVDRHQVIMHPLKPRI--SITKGVIYIAVIWTMATFFSLPHAICQKL
           160       170       180         190       200       210 

       170       180        190       200       210       220      
KIAA00 LTNQSVREVTQIKCI-ELKSELGRKWHKASNYIFVAIFWIVFLLLIVFYTAITKKIFKSH
       .: .  .....  :. ..       :.  .   :. .. . .:.. : :. ..::..  .
KIAA15 FTFKYSEDIVRSLCLPDFPEPADLFWKYLDLATFILLYILPLLIISVAYARVAKKLWLCN
             220       230       240       250       260       270 

        230             240       250       260       270       280
KIAA00 LKSSRNSTSV------KKKSSRNIFSIVFVFFVCFVPYHIARIPYTKSQTEAHYSCQSKE
       . .. .. .       :::. . .. .: .: .:. : .   .   .:..      ....
KIAA15 MIGDVTTEQYFALRRKKKKTIKMLMLVVVLFALCWFPLN-CYVLLLSSKV-----IRTNN
             280       290       300       310        320          

              290       300       310             320       330    
KIAA00 ILRYMKEFTLLLSAANVCLDPIIYFFLCQPFR-EI-----LCKKLHIPLKAQNDLDISRI
        : .  ..   .. ...: .:.:: .: . :: :.     .:..   : : :.:      
KIAA15 ALYFAFHW---FAMSSTCYNPFIYCWLNENFRIELKALLSMCQR---PPKPQEDRQPSPV
         330          340       350       360          370         

          340                                       
KIAA00 KRGNTTLESTDTL                                
                                                    
KIAA15 PSFRVAWTEKNDGQRAPLANNLLPTSQLQSGKTDLSSVEPIVTMS
     380       390       400       410       420    




347 residues in 1 query   sequences
1987158 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:03:57 2008 done: Thu Dec 18 15:03:58 2008
 Total Scan time:  0.360 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]