Cloned DNA sequence, length = 4112 bp
Revised DNA sequence, length = 1089 bp
<< Positions of primers used in RT-PCR experiment(s) >>
1 : f NN05849 303 - 323 TAT CCC CAG CGA CCT CAA GTT
r NN05850 3857 - 3837 GCT GTT CAG GCT CAC AAG GTT
<< Positions of inserion/deletion/mutation(s) in the aligned sequence >>
Predicted coding region: colored in green ( 1 - 999 in the revised sequence).1 : 534 - 3556 3023-bp deletion (in the revised sequence)
*- Clone Name -* 1 . . . . . 50
hk01721 1 CAAGAGGTGCTGTTTCATGGGGGCAGCAGCTTCACAGTGCTGCGTTGCAC 50
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 1 CAAGAGGTGCTGTTTCATGGGGGCAGCAGCTTCACAGTGCTGCGTTGCAC 50
51 . . . . . 100
hk01721 51 CAGCTTTGCACTGGAGAGCTGTGCCCACCCTGACCGCCACTACTCCTTAG 100
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 51 CAGCTTTGCACTGGAGAGCTGTGCCCACCCTGACCGCCACTACTCCTTAG 100
101 . . . . . 150
hk01721 101 CTGACCTGCTCAAGTACAACTTCTACCTGCCCTTCTTCTTCTTCGGGCCC 150
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 101 CTGACCTGCTCAAGTACAACTTCTACCTGCCCTTCTTCTTCTTCGGGCCC 150
151 . . . . . 200
hk01721 151 ATCATGACCTTTGATCGCTTCCATGCTCAGGTGAGCCAGGTGGAGCCAGT 200
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 151 ATCATGACCTTTGATCGCTTCCATGCTCAGGTGAGCCAGGTGGAGCCAGT 200
201 . . . . . 250
hk01721 201 GAGACGCGAGGGTGAGCTGTGGCACATCCGAGCCCAGGCAGGCCTAAGCG 250
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 201 GAGACGCGAGGGTGAGCTGTGGCACATCCGAGCCCAGGCAGGCCTAAGCG 250
251 . . . . . 300
hk01721 251 TGGTGGCCATCATGGCCGTCGACATCTTCTTTCACTTCTTCTACATCCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 251 TGGTGGCCATCATGGCCGTCGACATCTTCTTTCACTTCTTCTACATCCTC 300
301 . . . . . 350
hk01721 301 ACTATCCCCAGCGACCTCAAGTTCGCCAACCGCCTCCCAGACAGTGCCCT 350
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 301 ACTATCCCCAGCGACCTCAAGTTCGCCAACCGCCTCCCAGACAGTGCCCT 350
351 . . . . . 400
hk01721 351 CGCTGGCCTAGCCTATTCAAACCTGGTGTATGACTGGGTGAAGGCGGCCG 400
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 351 CGCTGGCCTAGCCTATTCAAACCTGGTGTATGACTGGGTGAAGGCGGCCG 400
401 . . . . . 450
hk01721 401 TCCTCTTTGGTGTTGTCAACACTGTGGCATGCCTCGACCACCTGGACCCA 450
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 401 TCCTCTTTGGTGTTGTCAACACTGTGGCATGCCTCGACCACCTGGACCCA 450
451 . . . . . 500
hk01721 451 CCCCAGCCTCCCAAGTGCATCACCGCACTCTACGTCTTTGCGGAAACGCA 500
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 451 CCCCAGCCTCCCAAGTGCATCACCGCACTCTACGTCTTTGCGGAAACGCA 500
501 . . . . . 550
hk01721 501 CTTTGACCGTGGCATCAACGACTGGCTTTGCAAGTGAGTAGGAGTGGGGT 550
|||||||||||||||||||||||||||||||||
hk01721(revised) 501 CTTTGACCGTGGCATCAACGACTGGCTTTGCAA----------------- 533
551 . . . . . 600
hk01721 551 GGGGGTGGTCACAGCCATCCTGCCAGGTGTCTGAGCAGGGCAGTGCCAAG 600
hk01721(revised) 534 -------------------------------------------------- 534
601 . . . . . 650
hk01721 601 ATGGGTCCACATTTTAAAAGATCACCCCTGGGCCAGGGGAAGCAAAGAGG 650
hk01721(revised) 534 -------------------------------------------------- 534
651 . . . . . 700
hk01721 651 GCAGTGAGGAGGTATTGGCAGAGGTCTGGGTGAAAGATATAGAAGTTAGG 700
hk01721(revised) 534 -------------------------------------------------- 534
701 . . . . . 750
hk01721 701 ATTTAAGTGAGGGCCCTCGAGGTGGAGAGAGGTGGTGGGAGGAGGGTCAC 750
hk01721(revised) 534 -------------------------------------------------- 534
751 . . . . . 800
hk01721 751 ACAGTCAGCAGCCTGAACAGGACGTGGCCATGAACTGTGGGTGTTGGGAA 800
hk01721(revised) 534 -------------------------------------------------- 534
801 . . . . . 850
hk01721 801 GGAGAAGGAGATGACGCTCAAATTGCTGTCTGCAGCCTGGGAGGATGGAG 850
hk01721(revised) 534 -------------------------------------------------- 534
851 . . . . . 900
hk01721 851 GGCAGTTTCCAGAGAGGGCTTCAGTTTAAGAAATGTATAGTCGCAATCTA 900
hk01721(revised) 534 -------------------------------------------------- 534
901 . . . . . 950
hk01721 901 GGAGACATCCCTGTGGAGGTTCAGGGAGGTGGTTGGGTCTGAGGGTCTGG 950
hk01721(revised) 534 -------------------------------------------------- 534
951 . . . . . 1000
hk01721 951 GTTTCTGAGGGTCCAGAGGACTGATGGAACTCAGAGCGTCCTGAGTGTGG 1000
hk01721(revised) 534 -------------------------------------------------- 534
1001 . . . . . 1050
hk01721 1001 GCAGGTGGTTTTTAGGCTTTGGGAGTGGGTAAGTCCTCAGGAGAGGGAGT 1050
hk01721(revised) 534 -------------------------------------------------- 534
1051 . . . . . 1100
hk01721 1051 GGTGTGAGAAGAGGAGAGACGGGGATGGCCGAGATTCAGCCTGCAAGAGC 1100
hk01721(revised) 534 -------------------------------------------------- 534
1101 . . . . . 1150
hk01721 1101 TCTGCTTGGAAGGAAAAGGAGCCAGCAGAAAGGACTGGAAAGAGTAGTTG 1150
hk01721(revised) 534 -------------------------------------------------- 534
1151 . . . . . 1200
hk01721 1151 GAGGGGCAGGAGAAGAATCAAGGTCATGTGCCACCCTGGAAGCCAAGGGA 1200
hk01721(revised) 534 -------------------------------------------------- 534
1201 . . . . . 1250
hk01721 1201 AGACCATCCAGGCATGGTGGGGACAGCTTGGTCAGATGCCACTGAGCCTC 1250
hk01721(revised) 534 -------------------------------------------------- 534
1251 . . . . . 1300
hk01721 1251 AAGGAAGCTGGAGACCGAGGATTAGTGCTGGTGACATGGAGGTTTTCAGC 1300
hk01721(revised) 534 -------------------------------------------------- 534
1301 . . . . . 1350
hk01721 1301 CTTTCATGGGCAAGGCAGGAGCAGGTAAGGAGGGAAAGTCAACTGAGGAG 1350
hk01721(revised) 534 -------------------------------------------------- 534
1351 . . . . . 1400
hk01721 1351 TAGAGAAGTGTGTGATGACTCCTGGAAGAAGCCTGGGACTGCAGGGGGAA 1400
hk01721(revised) 534 -------------------------------------------------- 534
1401 . . . . . 1450
hk01721 1401 GACAGGAGTGGCTGAGGGAGAAGAGGGATGTGTTAAAGATAGGAGAGAAT 1450
hk01721(revised) 534 -------------------------------------------------- 534
1451 . . . . . 1500
hk01721 1451 GGGACATGCTAAGAAGAATTATTCAACAGAGAAGCTGGGGATGCAGGATA 1500
hk01721(revised) 534 -------------------------------------------------- 534
1501 . . . . . 1550
hk01721 1501 CAGGGGTGATTGATGGAGTGAGGTCCCTGAAGAGGAAGGAGGTGAGGGTG 1550
hk01721(revised) 534 -------------------------------------------------- 534
1551 . . . . . 1600
hk01721 1551 TCTAGTTCCAGGCGGAGGCCTGGCTTCAGTGGGAGGAGGAGGAAGAGAAG 1600
hk01721(revised) 534 -------------------------------------------------- 534
1601 . . . . . 1650
hk01721 1601 CCAGTGTGGATGCAGAGGAAAGCAGGTTAATGTAGACAAGTAAGGGATTC 1650
hk01721(revised) 534 -------------------------------------------------- 534
1651 . . . . . 1700
hk01721 1651 CACCTGAAGGCTTCAGCCTTGTCCATGAAGCAGGAGGCACGGCCATCAGC 1700
hk01721(revised) 534 -------------------------------------------------- 534
1701 . . . . . 1750
hk01721 1701 TGAGAAAGCCAGGACAGGGACGTGGAGAGAGGCAACATATATGCTTACCC 1750
hk01721(revised) 534 -------------------------------------------------- 534
1751 . . . . . 1800
hk01721 1751 CCACAACCCAGCCTGGATCCCCCCACTCATACTATCTCTCCACTCATACT 1800
hk01721(revised) 534 -------------------------------------------------- 534
1801 . . . . . 1850
hk01721 1801 TGTGGGGAGATAAGAATACAGTGGCCCTTGCAGAGCAAGGGAGAAGCAGC 1850
hk01721(revised) 534 -------------------------------------------------- 534
1851 . . . . . 1900
hk01721 1851 TGACTAGAGAAATCTTGGCACTGAGTACCCAGGTGGTATTGGAGGTGGTG 1900
hk01721(revised) 534 -------------------------------------------------- 534
1901 . . . . . 1950
hk01721 1901 GGCTTATGAACTCCAGCATGTGAAGATGTGAGATTTCCCCCATGGGGCTT 1950
hk01721(revised) 534 -------------------------------------------------- 534
1951 . . . . . 2000
hk01721 1951 AGCTGCCTGGGTGTAGCTGAGGAGAAAGTAAGTGATTGGGCTCTCCCAGA 2000
hk01721(revised) 534 -------------------------------------------------- 534
2001 . . . . . 2050
hk01721 2001 TGGATGACAAGGAAGAAGTCAGGAATAAGGGTTTTTAGATTATTTATAGT 2050
hk01721(revised) 534 -------------------------------------------------- 534
2051 . . . . . 2100
hk01721 2051 CATGACTCATTGGATATAAGCCTGCTAAGGACGGTGGTGAAGGTGGGAGG 2100
hk01721(revised) 534 -------------------------------------------------- 534
2101 . . . . . 2150
hk01721 2101 GTCACAAGATCAATGGGATTGAAGAACTGAAGCTGGGGGGCCAGGAGGTC 2150
hk01721(revised) 534 -------------------------------------------------- 534
2151 . . . . . 2200
hk01721 2151 AAGAGGAGTTGGGCAAAGAATGGGAATTAGAAAGGAGTGAACTTTCAAGT 2200
hk01721(revised) 534 -------------------------------------------------- 534
2201 . . . . . 2250
hk01721 2201 GGTGACAAAGTTGGGGCATGGCCATGGGTGTGGGTGGCTGAGGTGGAGTG 2250
hk01721(revised) 534 -------------------------------------------------- 534
2251 . . . . . 2300
hk01721 2251 GAGAAAAAGCCATTGGAAATGAGGAGGTCGAGGAATGGAGAGGCTGGTTA 2300
hk01721(revised) 534 -------------------------------------------------- 534
2301 . . . . . 2350
hk01721 2301 TTCCTGGGTCTTCCACAGAACTTATTTAACAAATATTTATTGAGCACCTA 2350
hk01721(revised) 534 -------------------------------------------------- 534
2351 . . . . . 2400
hk01721 2351 TGTGCCAGGCATTGTTCTAGGCACTGGGGATACAGCAGTGAACATGGCAA 2400
hk01721(revised) 534 -------------------------------------------------- 534
2401 . . . . . 2450
hk01721 2401 AGACCCTGAACTCATGGAGCTTACAGTCTAGTGGGGAGAAACAGACCATA 2450
hk01721(revised) 534 -------------------------------------------------- 534
2451 . . . . . 2500
hk01721 2451 AACAGGTAAACAAACATAAATAAGATAATTTTAGAGAGTGGTAAGTGTTA 2500
hk01721(revised) 534 -------------------------------------------------- 534
2501 . . . . . 2550
hk01721 2501 TGAAGAAAATAAAATTGCAATGGGATAGAAGTTGACAACAGGGTAGAAGC 2550
hk01721(revised) 534 -------------------------------------------------- 534
2551 . . . . . 2600
hk01721 2551 TTCTTTAGTCGGGGTCTAGGCAGGCTTCTCTGAGGAGATGATATTTGAAT 2600
hk01721(revised) 534 -------------------------------------------------- 534
2601 . . . . . 2650
hk01721 2601 TGAGATTTGAGTGATAAGGAGATGTGGAGCAGAGAATACCAGGTAGAGGG 2650
hk01721(revised) 534 -------------------------------------------------- 534
2651 . . . . . 2700
hk01721 2651 AACAACAAGGGCAAAGGCCTTGAGACACAAACCAACTGTGTGGGTGTAAA 2700
hk01721(revised) 534 -------------------------------------------------- 534
2701 . . . . . 2750
hk01721 2701 GGTAAGAAAGGCCAGTGAGGCCAGCATGATGAACTGGGGGAGCATGGTGG 2750
hk01721(revised) 534 -------------------------------------------------- 534
2751 . . . . . 2800
hk01721 2751 CTGATTTGGTCAGGAAGGGAACAGAAACCAGACCACTTGGGATCTTCTAG 2800
hk01721(revised) 534 -------------------------------------------------- 534
2801 . . . . . 2850
hk01721 2801 CCAGAGTAAAGAGACTGAGTTTATTCCTATTGTAATGGGGAGCTATTCAG 2850
hk01721(revised) 534 -------------------------------------------------- 534
2851 . . . . . 2900
hk01721 2851 AGAGGTTAATCATGGAAGTGATGTGACCTGAGCTACACTCTTAAAAGATG 2900
hk01721(revised) 534 -------------------------------------------------- 534
2901 . . . . . 2950
hk01721 2901 CCTCTGGCTGCTGTGTGGAGAATGAACCATGGGGGCAAAAGCAGAAACAA 2950
hk01721(revised) 534 -------------------------------------------------- 534
2951 . . . . . 3000
hk01721 2951 GAAGACCACTTAAGAGGCTCTTGCAATAATTTATGTGAGAAGAGTGATCA 3000
hk01721(revised) 534 -------------------------------------------------- 534
3001 . . . . . 3050
hk01721 3001 TCTTGACTAGGGTGGTGGTGGTAGAGGAGGTGAGTGGTGGTCAGGACTGA 3050
hk01721(revised) 534 -------------------------------------------------- 534
3051 . . . . . 3100
hk01721 3051 GAGGAGCCAACAGAATTTGCTGGCTTGCTTGGATGTGGGTGATGAGGCAA 3100
hk01721(revised) 534 -------------------------------------------------- 534
3101 . . . . . 3150
hk01721 3101 ACTGAGAATCCAAGATGGCACCAAGGCTTATACCCTGAGCAACTGAATGG 3150
hk01721(revised) 534 -------------------------------------------------- 534
3151 . . . . . 3200
hk01721 3151 ATGGTGGTGCCATTCACTGAGATGAGGACGGAGCTGGGTTTGAGCAGGGA 3200
hk01721(revised) 534 -------------------------------------------------- 534
3201 . . . . . 3250
hk01721 3201 TAGGGGAATCTGTCAATCAAGTGACATGGCTAGTAGCAATTGCATATACA 3250
hk01721(revised) 534 -------------------------------------------------- 534
3251 . . . . . 3300
hk01721 3251 AATCAGGAGAGACTGGGCTAAAGACACAGATTTAGGGGTCATCGTCATAG 3300
hk01721(revised) 534 -------------------------------------------------- 534
3301 . . . . . 3350
hk01721 3301 AGCTAGTACTTGAAATCTTGGGTCTGGATGAGATCATTTGGGAAGTAAAC 3350
hk01721(revised) 534 -------------------------------------------------- 534
3351 . . . . . 3400
hk01721 3351 GAACAGAGATAGAGAAGCTATAATGTCCCAGGCTGAGCCTGCCACAATTT 3400
hk01721(revised) 534 -------------------------------------------------- 534
3401 . . . . . 3450
hk01721 3401 GAAGTTGGTTGGAGGAGGAGCTGCTACGTGAGGTCAGGAATGTTGAATGC 3450
hk01721(revised) 534 -------------------------------------------------- 534
3451 . . . . . 3500
hk01721 3451 ACCCAGGGTGACAGTGTTGAGGAGGACGCCCTGTTGTGTGTCCTCTCCCA 3500
hk01721(revised) 534 -------------------------------------------------- 534
3501 . . . . . 3550
hk01721 3501 TCTCATCCCTGCCCTTTCCCACACTCCCAGTGGCCCTTCTCCCATCTTTC 3550
hk01721(revised) 534 -------------------------------------------------- 534
3551 . . . . . 3600
hk01721 3551 CTGCAGATATGTGTATAACCACATTGGTGGGGAGCATTCCGCTGTGATCC 3600
||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 534 ------ATATGTGTATAACCACATTGGTGGGGAGCATTCCGCTGTGATCC 577
3601 . . . . . 3650
hk01721 3601 CAGAGCTGGCAGCCACAGTGGCCACATTTGCCATCACCACACTGTGGCTT 3650
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 578 CAGAGCTGGCAGCCACAGTGGCCACATTTGCCATCACCACACTGTGGCTT 627
3651 . . . . . 3700
hk01721 3651 GGGCCTTGTGACATTGTCTACCTGTGGTCATTCCTTAACTGCTTTGGCCT 3700
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 628 GGGCCTTGTGACATTGTCTACCTGTGGTCATTCCTTAACTGCTTTGGCCT 677
3701 . . . . . 3750
hk01721 3701 CAACTTTGAGCTCTGGATGCAAAAACTGGCAGAGTGGGGGCCCCTAGCAC 3750
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 678 CAACTTTGAGCTCTGGATGCAAAAACTGGCAGAGTGGGGGCCCCTAGCAC 727
3751 . . . . . 3800
hk01721 3751 GAATTGAGGCCTCTCTGTCAGTGCAGATGTCCCGTAGGGTCCGGGCCCTG 3800
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 728 GAATTGAGGCCTCTCTGTCAGTGCAGATGTCCCGTAGGGTCCGGGCCCTG 777
3801 . . . . . 3850
hk01721 3801 TTTGGAGCCATGAACTTCTGGGCCATCATCATGTACAACCTTGTGAGCCT 3850
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 778 TTTGGAGCCATGAACTTCTGGGCCATCATCATGTACAACCTTGTGAGCCT 827
3851 . . . . . 3900
hk01721 3851 GAACAGCCTCAAATTCACAGAGCTGGTTGCCCGGCGCCTGCTACTCACAG 3900
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 828 GAACAGCCTCAAATTCACAGAGCTGGTTGCCCGGCGCCTGCTACTCACAG 877
3901 . . . . . 3950
hk01721 3901 GGTTCCCCCAGACCACGCTGTCCATCCTGTTTGTCACCTACTGTGGCGTC 3950
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 878 GGTTCCCCCAGACCACGCTGTCCATCCTGTTTGTCACCTACTGTGGCGTC 927
3951 . . . . . 4000
hk01721 3951 CAGCTGGTAAAGGAGCGTGAGCGAACCTTGGCACTGGAGGAGGAGCAGAA 4000
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 928 CAGCTGGTAAAGGAGCGTGAGCGAACCTTGGCACTGGAGGAGGAGCAGAA 977
4001 . . . . . 4050
hk01721 4001 GCAGGACAAAGAGAAGCCGGAGTAGGAGGGAGCGGGTAGAGGGATGGGCT 4050
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 978 GCAGGACAAAGAGAAGCCGGAGTAGGAGGGAGCGGGTAGAGGGATGGGCT 1027
4051 . . . . . 4100
hk01721 4051 CTGCTCAGCTATTCTTGGGCCAGATGGGGCCTGACCGATAGAATAAAAGA 4100
||||||||||||||||||||||||||||||||||||||||||||||||||
hk01721(revised) 1028 CTGCTCAGCTATTCTTGGGCCAGATGGGGCCTGACCGATAGAATAAAAGA 1077
4101 . 4112
hk01721 4101 CTTTTCTACAAC 4112
||||||||||||
hk01721(revised) 1078 CTTTTCTACAAC 1089