Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016683A_C01 KMC016683A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568308.1| putative protein; protein id: At5g15070.1, supp... 121 5e-27
gb|AAL24104.1| unknown protein [Arabidopsis thaliana] 121 5e-27
pir||T51452 hypothetical protein F2G14_190 - Arabidopsis thalian... 121 5e-27
ref|NP_186780.1| unknown protein; protein id: At3g01310.1 [Arabi... 108 3e-23
gb|AAF26144.1|AC008261_1 unknown protein [Arabidopsis thaliana] 108 3e-23
>ref|NP_568308.1| putative protein; protein id: At5g15070.1, supported by cDNA:
gi_16604622 [Arabidopsis thaliana]
gi|25054864|gb|AAN71921.1| unknown protein [Arabidopsis
thaliana]
Length = 1049
Score = 121 bits (303), Expect = 5e-27
Identities = 61/71 (85%), Positives = 63/71 (87%), Gaps = 3/71 (4%)
Frame = -2
Query: 516 QEHTLPIMGPERLQEIGSYLTLETMEKMIRSFAMPAEDF-PPATPAGFSGYFSK--GVLE 346
+EHTLPIMGPERLQE+GS LTLETMEKMIR FAMPAEDF PP TPAGFSGYFSK VLE
Sbjct: 973 REHTLPIMGPERLQEVGSCLTLETMEKMIRPFAMPAEDFPPPCTPAGFSGYFSKSAAVLE 1032
Query: 345 RLVNLWPFHKN 313
RLV LWPFHKN
Sbjct: 1033 RLVKLWPFHKN 1043
>gb|AAL24104.1| unknown protein [Arabidopsis thaliana]
Length = 1049
Score = 121 bits (303), Expect = 5e-27
Identities = 61/71 (85%), Positives = 63/71 (87%), Gaps = 3/71 (4%)
Frame = -2
Query: 516 QEHTLPIMGPERLQEIGSYLTLETMEKMIRSFAMPAEDF-PPATPAGFSGYFSK--GVLE 346
+EHTLPIMGPERLQE+GS LTLETMEKMIR FAMPAEDF PP TPAGFSGYFSK VLE
Sbjct: 973 REHTLPIMGPERLQEVGSCLTLETMEKMIRPFAMPAEDFPPPCTPAGFSGYFSKSAAVLE 1032
Query: 345 RLVNLWPFHKN 313
RLV LWPFHKN
Sbjct: 1033 RLVKLWPFHKN 1043
>pir||T51452 hypothetical protein F2G14_190 - Arabidopsis thaliana
gi|9755674|emb|CAC01826.1| putative protein [Arabidopsis
thaliana]
Length = 1030
Score = 121 bits (303), Expect = 5e-27
Identities = 61/71 (85%), Positives = 63/71 (87%), Gaps = 3/71 (4%)
Frame = -2
Query: 516 QEHTLPIMGPERLQEIGSYLTLETMEKMIRSFAMPAEDF-PPATPAGFSGYFSK--GVLE 346
+EHTLPIMGPERLQE+GS LTLETMEKMIR FAMPAEDF PP TPAGFSGYFSK VLE
Sbjct: 954 REHTLPIMGPERLQEVGSCLTLETMEKMIRPFAMPAEDFPPPCTPAGFSGYFSKSAAVLE 1013
Query: 345 RLVNLWPFHKN 313
RLV LWPFHKN
Sbjct: 1014 RLVKLWPFHKN 1024
>ref|NP_186780.1| unknown protein; protein id: At3g01310.1 [Arabidopsis thaliana]
gi|6094553|gb|AAF03495.1|AC010676_5 unknown protein
[Arabidopsis thaliana]
Length = 1015
Score = 108 bits (271), Expect = 3e-23
Identities = 56/72 (77%), Positives = 63/72 (86%), Gaps = 3/72 (4%)
Frame = -2
Query: 516 QEHTLPIMGPERLQEIGSYLTLETMEKMIRSFAMPAEDFPPA-TPAGFSGYFSK--GVLE 346
+EHTLPIMGPERLQE+GS L+LETMEKM+R FAMPAEDFPPA TP GFSGYFSK VLE
Sbjct: 938 REHTLPIMGPERLQEVGSCLSLETMEKMVRPFAMPAEDFPPASTPVGFSGYFSKSAAVLE 997
Query: 345 RLVNLWPFHKNA 310
RLVNL+ +KN+
Sbjct: 998 RLVNLFHNYKNS 1009
>gb|AAF26144.1|AC008261_1 unknown protein [Arabidopsis thaliana]
Length = 498
Score = 108 bits (271), Expect = 3e-23
Identities = 56/72 (77%), Positives = 63/72 (86%), Gaps = 3/72 (4%)
Frame = -2
Query: 516 QEHTLPIMGPERLQEIGSYLTLETMEKMIRSFAMPAEDFPPA-TPAGFSGYFSK--GVLE 346
+EHTLPIMGPERLQE+GS L+LETMEKM+R FAMPAEDFPPA TP GFSGYFSK VLE
Sbjct: 421 REHTLPIMGPERLQEVGSCLSLETMEKMVRPFAMPAEDFPPASTPVGFSGYFSKSAAVLE 480
Query: 345 RLVNLWPFHKNA 310
RLVNL+ +KN+
Sbjct: 481 RLVNLFHNYKNS 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,514,063
Number of Sequences: 1393205
Number of extensions: 8515402
Number of successful extensions: 18681
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18667
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
