Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016667A_C01 KMC016667A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis t... 173 2e-42
sp|P36428|SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precur... 173 2e-42
pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thali... 173 2e-42
ref|NP_175439.1| alanine--tRNA ligase, putative; protein id: At1... 173 2e-42
pir||D96538 cytosolic tRNA-Ala synthetase [imported] - Arabidops... 173 2e-42
>emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana]
Length = 1003
Score = 173 bits (438), Expect = 2e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -1
Query: 643 NRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMS 464
NRDAASLVNNDDPTC+EIWNLVFIQFNRE+DGSLK LPAKHVDTGMGFERLTS+LQNKMS
Sbjct: 250 NRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMS 309
Query: 463 NYDTDVFLPIFDAIQLATGARPYSGKVGA*D*GRI 359
NYDTDVF+PIFD IQ ATGARPYSGKVG D R+
Sbjct: 310 NYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRV 344
>sp|P36428|SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (Alanine--tRNA
ligase) (AlaRS)
Length = 1003
Score = 173 bits (438), Expect = 2e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -1
Query: 643 NRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMS 464
NRDAASLVNNDDPTC+EIWNLVFIQFNRE+DGSLK LPAKHVDTGMGFERLTS+LQNKMS
Sbjct: 250 NRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMS 309
Query: 463 NYDTDVFLPIFDAIQLATGARPYSGKVGA*D*GRI 359
NYDTDVF+PIFD IQ ATGARPYSGKVG D R+
Sbjct: 310 NYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRV 344
>pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana (fragment)
Length = 989
Score = 173 bits (438), Expect = 2e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -1
Query: 643 NRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMS 464
NRDAASLVNNDDPTC+EIWNLVFIQFNRE+DGSLK LPAKHVDTGMGFERLTS+LQNKMS
Sbjct: 236 NRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMS 295
Query: 463 NYDTDVFLPIFDAIQLATGARPYSGKVGA*D*GRI 359
NYDTDVF+PIFD IQ ATGARPYSGKVG D R+
Sbjct: 296 NYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRV 330
>ref|NP_175439.1| alanine--tRNA ligase, putative; protein id: At1g50200.1
[Arabidopsis thaliana]
Length = 1027
Score = 173 bits (438), Expect = 2e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -1
Query: 643 NRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMS 464
NRDAASLVNNDDPTC+EIWNLVFIQFNRE+DGSLK LPAKHVDTGMGFERLTS+LQNKMS
Sbjct: 250 NRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMS 309
Query: 463 NYDTDVFLPIFDAIQLATGARPYSGKVGA*D*GRI 359
NYDTDVF+PIFD IQ ATGARPYSGKVG D R+
Sbjct: 310 NYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRV 344
>pir||D96538 cytosolic tRNA-Ala synthetase [imported] - Arabidopsis thaliana
gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala
synthetase [Arabidopsis thaliana]
gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis
thaliana]
Length = 955
Score = 173 bits (438), Expect = 2e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = -1
Query: 643 NRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKSLPAKHVDTGMGFERLTSILQNKMS 464
NRDAASLVNNDDPTC+EIWNLVFIQFNRE+DGSLK LPAKHVDTGMGFERLTS+LQNKMS
Sbjct: 202 NRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMS 261
Query: 463 NYDTDVFLPIFDAIQLATGARPYSGKVGA*D*GRI 359
NYDTDVF+PIFD IQ ATGARPYSGKVG D R+
Sbjct: 262 NYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRV 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,356,262
Number of Sequences: 1393205
Number of extensions: 10439864
Number of successful extensions: 22173
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 21543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22142
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
