Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016637A_C01 KMC016637A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06201.1| P0018C10.2 [Oryza sativa (japonica cultivar-grou... 41 0.015
ref|NP_683293.1| hypothetical protein; protein id: At1g09812.1 [... 40 0.033
ref|NP_172579.1| hypothetical protein; protein id: At1g11120.1 [... 35 0.82
gb|AAO20064.1| putative AFG1-like ATPase [Oryza sativa (japonica... 33 4.1
ref|NP_569016.1| expressed protein; protein id: At5g65660.1, sup... 32 5.3
>dbj|BAC06201.1| P0018C10.2 [Oryza sativa (japonica cultivar-group)]
gi|22202668|dbj|BAC07326.1| P0471B04.10 [Oryza sativa
(japonica cultivar-group)]
Length = 158
Score = 40.8 bits (94), Expect = 0.015
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -1
Query: 462 VSVLMPGDAIPTFIAHPA---PAPCCPERNSWPSHQQN 358
+SVLMPG PT++A PA PAPC E WP H +
Sbjct: 113 LSVLMPGQRYPTYLAQPAPLPPAPCPREGVHWPPHDHD 150
>ref|NP_683293.1| hypothetical protein; protein id: At1g09812.1 [Arabidopsis
thaliana]
Length = 128
Score = 39.7 bits (91), Expect = 0.033
Identities = 17/30 (56%), Positives = 21/30 (69%)
Frame = -1
Query: 462 VSVLMPGDAIPTFIAHPAPAPCCPERNSWP 373
VSV+MPG+ +P+ IA PAP PC E WP
Sbjct: 96 VSVVMPGEKLPSHIALPAPLPCRREGIHWP 125
>ref|NP_172579.1| hypothetical protein; protein id: At1g11120.1 [Arabidopsis
thaliana] gi|25402647|pir||C86245 hypothetical protein
[imported] - Arabidopsis thaliana
gi|2252628|gb|AAB65491.1| hypothetical protein;
12757-8343 [Arabidopsis thaliana]
Length = 367
Score = 35.0 bits (79), Expect = 0.82
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 486 QMSVYDSGVSVLMPGDAIPT 427
+M+VY +GVSVLMPGD IPT
Sbjct: 89 RMTVYSNGVSVLMPGDDIPT 108
>gb|AAO20064.1| putative AFG1-like ATPase [Oryza sativa (japonica cultivar-group)]
Length = 740
Score = 32.7 bits (73), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 471 DSGVSVLMPGDAIPTFIAHPAPAPCC 394
+ G+ V+MPGD IP F A P P C
Sbjct: 83 ECGLPVIMPGDRIPKFFARPCPHEKC 108
>ref|NP_569016.1| expressed protein; protein id: At5g65660.1, supported by cDNA:
25419. [Arabidopsis thaliana] gi|21554387|gb|AAM63494.1|
unknown [Arabidopsis thaliana]
Length = 136
Score = 32.3 bits (72), Expect = 5.3
Identities = 16/26 (61%), Positives = 16/26 (61%)
Frame = -1
Query: 462 VSVLMPGDAIPTFIAHPAPAPCCPER 385
V VLMPGD P FIA P PC P R
Sbjct: 86 VPVLMPGDNTPKFIA--LPCPCAPPR 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,669,222
Number of Sequences: 1393205
Number of extensions: 11461767
Number of successful extensions: 26694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26678
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
