Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015649A_C01 KMC015649A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB62628.1| hypothetical protein~similar to Arabidopsis thal... 32 5.3
ref|NP_566915.1| putative protein; protein id: At3g49060.1, supp... 31 9.1
>dbj|BAB62628.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
F14O13.8 [Oryza sativa (japonica cultivar-group)]
gi|15408852|dbj|BAB64241.1| P0672D08.14 [Oryza sativa
(japonica cultivar-group)] gi|20804433|dbj|BAB92130.1|
hypothetical protein~similar to Arabidopsis thaliana
chromosome 3, F14O13.8 [Oryza sativa (japonica
cultivar-group)]
Length = 990
Score = 31.6 bits (70), Expect = 5.3
Identities = 14/27 (51%), Positives = 16/27 (58%)
Frame = +3
Query: 393 PQTFNVHYSDHDQKGEPTGGARXRYRI 473
P TF V D D + PTGGAR R R+
Sbjct: 104 PATFTVVSKDRDSRRVPTGGARVRVRV 130
>ref|NP_566915.1| putative protein; protein id: At3g49060.1, supported by cDNA:
gi_15215681 [Arabidopsis thaliana]
gi|15215682|gb|AAK91387.1| AT3g49060/T2J13_100
[Arabidopsis thaliana] gi|28416483|gb|AAO42772.1|
At3g49060/T2J13_100 [Arabidopsis thaliana]
Length = 805
Score = 30.8 bits (68), Expect = 9.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 355 CQKEMLAKYSFKYTLKLTSCDWSYF*KVVHLWGKRDFFLLKKGPIISSIW 206
C E++A++ K+ + + D Y K+ L K+ F+ KK P IW
Sbjct: 115 CIVELIARHKIKWLVMGAASDKHYSWKMTDLKSKKAIFVCKKAPDSCHIW 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,054,832
Number of Sequences: 1393205
Number of extensions: 6800089
Number of successful extensions: 11666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11663
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
