Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014894A_C01 KMC014894A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_242960.1| hypothetical protein XP_242960 [Rattus norvegicus] 37 0.20
gb|ZP_00026206.1| hypothetical protein [Ralstonia metallidurans] 35 0.58
ref|NP_010289.1| gene dosage suppressors of the conditional grow... 35 0.76
ref|ZP_00029786.1| hypothetical protein [Burkholderia fungorum] 34 0.99
gb|ZP_00038141.1| hypothetical protein [Xylella fastidiosa Dixon] 33 1.7
>ref|XP_242960.1| hypothetical protein XP_242960 [Rattus norvegicus]
Length = 250
Score = 36.6 bits (83), Expect = 0.20
Identities = 30/104 (28%), Positives = 43/104 (40%), Gaps = 7/104 (6%)
Frame = -1
Query: 393 SMLFFTSVAAKVVW*LLLG-----CLLLACISMVLVSLCLSWLVLIGLGSKLCCLWKVFY 229
SM + V+W + G C+L + I V C+ W + G+ S C LW VFY
Sbjct: 21 SMFYGVCSMEYVLWSMFYGVCSMECVLWSMIYGVCSMECVLWSMFYGVCSMECVLWSVFY 80
Query: 228 DFT*TFAHSCGCWGFQWFYG--RVLKILWEVFKGYLGGFLMVLW 103
+ C W FYG + +LW + G + VLW
Sbjct: 81 G---VCSMECVLWSM--FYGVCSMECVLWSMIYG-VCSMECVLW 118
Score = 36.2 bits (82), Expect = 0.26
Identities = 30/104 (28%), Positives = 45/104 (42%), Gaps = 7/104 (6%)
Frame = -1
Query: 393 SMLFFTSVAAKVVW*LLLGCLLLACI--SM---VLVSLCLSWLVLIGLGSKLCCLWKVFY 229
SM + V+W + G + C+ SM V C+ W ++ G+ S C LW +FY
Sbjct: 63 SMFYGVCSMECVLWSVFYGVCSMECVLWSMFYGVCSMECVLWSMIYGVCSMECVLWSMFY 122
Query: 228 DFT*TFAHSCGCWGFQWFYG--RVLKILWEVFKGYLGGFLMVLW 103
+ C W FYG + +LW +F G + VLW
Sbjct: 123 G---VCSMECVLWSV--FYGVCSMEYVLWSMFYG-VCSMECVLW 160
Score = 36.2 bits (82), Expect = 0.26
Identities = 30/95 (31%), Positives = 40/95 (41%), Gaps = 9/95 (9%)
Frame = -1
Query: 360 VVW*LLLG-----CLLLACISMVLVSLCLSWLVLIGLGSKLCCLWKVFYDFT*TFAHSCG 196
V+W + G C+L + I V C+ W + G+ S C LW VFY C
Sbjct: 88 VLWSMFYGVCSMECVLWSMIYGVCSMECVLWSMFYGVCSMECVLWSVFYGV-------CS 140
Query: 195 CWGFQW--FYG--RVLKILWEVFKGYLGGFLMVLW 103
W FYG + +LW VF G + VLW
Sbjct: 141 MEYVLWSMFYGVCSMECVLWSVFYG-VCSMECVLW 174
Score = 33.5 bits (75), Expect = 1.7
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = -1
Query: 294 CLSWLVLIGLGSKLCCLWKVFYDFT*TFAHSCGCWGFQW--FYG--RVLKILWEVFKGYL 127
C+ W V G+ S C LW VFY C W FYG + +LW VF G +
Sbjct: 157 CVLWSVFYGVCSMECVLWSVFYGV-------CSMEFVLWSMFYGVCSMEYVLWSVFYG-V 208
Query: 126 GGFLMVLW 103
VLW
Sbjct: 209 CSMECVLW 216
Score = 31.2 bits (69), Expect = 8.4
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = -1
Query: 393 SMLFFTSVAAKVVW*LLLG-----CLLLACISMVLVSLCLSWLVLIGLGSKLCCLWKVFY 229
SM + V+W + G C+L + V C+ W V G+ S C LW +FY
Sbjct: 189 SMFYGVCSMEYVLWSVFYGVCSMECVLWSVFYGVCSMECVLWSVFYGVCSMECVLWSMFY 248
>gb|ZP_00026206.1| hypothetical protein [Ralstonia metallidurans]
Length = 855
Score = 35.0 bits (79), Expect = 0.58
Identities = 23/91 (25%), Positives = 43/91 (46%), Gaps = 2/91 (2%)
Frame = +2
Query: 260 DPRPIKTNQLKHKETKTIEMQAS--SKQPNNSYHTTFAATLVKKSIEVGREPSNQTQPLT 433
DP + +++ ET I +QAS + HT +A+ V + +++G EP + L
Sbjct: 676 DPDVVMIGEIRDLETAQIAVQASLTGHLVLATLHTNDSASAVTRLVDMGIEPFLLSSSLI 735
Query: 434 HPTEEVVNRKLCSKVHHRRVLQKNPPKSNTV 526
+ + R+LC V++ P +S T+
Sbjct: 736 GVLAQRLVRRLCPHCKREEVIEVTPGESETL 766
>ref|NP_010289.1| gene dosage suppressors of the conditional growth defect of several
temperature-sensitive A kinase mutants; Sok1p
[Saccharomyces cerevisiae]
gi|1351087|sp|P40317|SOK1_YEAST SOK1 PROTEIN
gi|1078384|pir||S50987 SOK1 protein - yeast
(Saccharomyces cerevisiae) gi|642811|emb|CAA88066.1|
Sok1p [Saccharomyces cerevisiae]
Length = 901
Score = 34.7 bits (78), Expect = 0.76
Identities = 24/73 (32%), Positives = 38/73 (51%), Gaps = 1/73 (1%)
Frame = +2
Query: 323 ASSKQPNNSYHTTFAATLVKKSIEVGREPSNQTQPLTHPTEEVVNRKLCSKVHHRRVLQK 502
++ K ++S T ++L K S + NQ L HPT +++K S+ HH+ L
Sbjct: 237 SNKKMRSHSVPTILHSSLRKLSSH-NQYYRNQNILLNHPTPSGISKKKFSRNHHQPYLHS 295
Query: 503 NPP-KSNTVNLKR 538
N P SN ++LKR
Sbjct: 296 NNPLSSNPLSLKR 308
>ref|ZP_00029786.1| hypothetical protein [Burkholderia fungorum]
Length = 431
Score = 34.3 bits (77), Expect = 0.99
Identities = 23/82 (28%), Positives = 41/82 (49%), Gaps = 2/82 (2%)
Frame = +2
Query: 233 KTFQRQQSLDPRPIKTNQLKHKETKTIEMQASSKQPN--NSYHTTFAATLVKKSIEVGRE 406
+ F RQ DP I +++ +ET + ++A+ ++ HT A V + I++G E
Sbjct: 245 RAFLRQ---DPDVIMVGEIRDEETADVAVKAAQTGHLVLSTLHTNDAPAAVARLIDIGVE 301
Query: 407 PSNQTQPLTHPTEEVVNRKLCS 472
P N L T + + R+LC+
Sbjct: 302 PYNLAAALRMVTAQRLVRRLCT 323
>gb|ZP_00038141.1| hypothetical protein [Xylella fastidiosa Dixon]
Length = 577
Score = 33.5 bits (75), Expect = 1.7
Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 2/93 (2%)
Frame = +2
Query: 233 KTFQRQQSLDPRPIKTNQLKHKETKTIEMQASSK--QPNNSYHTTFAATLVKKSIEVGRE 406
++F RQ DP I +++ ET I ++A+ ++ HT A + + + +G
Sbjct: 392 RSFLRQ---DPDVIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIA 448
Query: 407 PSNQTQPLTHPTEEVVNRKLCSKVHHRRVLQKN 505
P N T +T + + R+LC+K L KN
Sbjct: 449 PYNITSSVTLVIAQRLARRLCNKCKRPVQLPKN 481
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,651,672
Number of Sequences: 1393205
Number of extensions: 11937405
Number of successful extensions: 33560
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 31694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33429
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
