Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008750A_C01 KMC008750A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201547.1| glycosyl hydrolase family 17; protein id: At5g6... 69 3e-15
ref|NP_178066.1| hypothetical protein; protein id: At1g79480.1 [... 82 5e-15
dbj|BAB90413.1| beta-1,3 glucanase-like protein [Oryza sativa (j... 68 2e-13
pir||T06662 hypothetical protein T6G15.150 - Arabidopsis thalian... 74 2e-12
ref|NP_193096.2| glycosyl hydrolase family 17; protein id: At4g1... 74 2e-12
>ref|NP_201547.1| glycosyl hydrolase family 17; protein id: At5g67460.1 [Arabidopsis
thaliana] gi|9757867|dbj|BAB08454.1|
gb|AAD30228.1~gene_id:K9I9.2~similar to unknown protein
[Arabidopsis thaliana]
Length = 380
Score = 69.3 bits (168), Expect(2) = 3e-15
Identities = 30/52 (57%), Positives = 41/52 (78%), Gaps = 1/52 (1%)
Frame = -1
Query: 571 AMDYACGSG-ADCKLVQPNGPCFQPNTVLAHASYAFNSYFQNTKNGGGTL*F 419
++D+ACG G A+C ++P+G C+ P+TV+AHASYAFNSY+Q TK GGT F
Sbjct: 308 SLDFACGQGGANCDEIKPHGICYYPDTVMAHASYAFNSYWQKTKRNGGTCSF 359
Score = 33.9 bits (76), Expect(2) = 3e-15
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 426 CDFGGTAMLVTVDPSH*H 373
C FGGTAML+T DPS+ H
Sbjct: 357 CSFGGTAMLITTDPSYQH 374
>ref|NP_178066.1| hypothetical protein; protein id: At1g79480.1 [Arabidopsis
thaliana] gi|25406587|pir||A96826 T8K14.10 [imported] -
Arabidopsis thaliana
gi|4835761|gb|AAD30228.1|AC007202_10 T8K14.10
[Arabidopsis thaliana]
Length = 356
Score = 82.0 bits (201), Expect = 5e-15
Identities = 34/51 (66%), Positives = 44/51 (85%)
Frame = -1
Query: 571 AMDYACGSGADCKLVQPNGPCFQPNTVLAHASYAFNSYFQNTKNGGGTL*F 419
AM++ACGSGADC +QPNGPCF+PNT+ AHAS+A+NSY+Q TK+ GG+ F
Sbjct: 282 AMNFACGSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTF 332
Score = 36.2 bits (82), Expect = 0.30
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 522 PMAHAFSPTLCWPMLLMLLIAIFRTPRMVEAPCDFGGTAMLVTVDPS 382
P F P W + ++ + C FGGT MLVTVDPS
Sbjct: 298 PNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGTGMLVTVDPS 344
>dbj|BAB90413.1| beta-1,3 glucanase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 279
Score = 68.2 bits (165), Expect(2) = 2e-13
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = -1
Query: 571 AMDYACGSGADCKLVQPNGPCFQPNTVLAHASYAFNSYFQ 452
A+DYACG GADC +QP G CF P+TV HASYAFNSY+Q
Sbjct: 107 ALDYACGYGADCSAIQPGGSCFNPDTVHDHASYAFNSYYQ 146
Score = 28.5 bits (62), Expect(2) = 2e-13
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -2
Query: 438 VEAPCDFGGTAMLVTVDPS 382
V CDFGGTA + DPS
Sbjct: 150 VATSCDFGGTATITNTDPS 168
>pir||T06662 hypothetical protein T6G15.150 - Arabidopsis thaliana
gi|4678386|emb|CAB41118.1| putative protein [Arabidopsis
thaliana] gi|7268063|emb|CAB78402.1| putative protein
[Arabidopsis thaliana]
Length = 256
Score = 73.6 bits (179), Expect = 2e-12
Identities = 33/51 (64%), Positives = 37/51 (71%)
Frame = -1
Query: 571 AMDYACGSGADCKLVQPNGPCFQPNTVLAHASYAFNSYFQNTKNGGGTL*F 419
A+DYAC +GADC +QPNG CF PNTV AHASYAFNSYFQ G+ F
Sbjct: 76 ALDYACAAGADCAPIQPNGLCFLPNTVQAHASYAFNSYFQRAAMAPGSCNF 126
>ref|NP_193096.2| glycosyl hydrolase family 17; protein id: At4g13600.1 [Arabidopsis
thaliana]
Length = 183
Score = 73.6 bits (179), Expect = 2e-12
Identities = 33/51 (64%), Positives = 37/51 (71%)
Frame = -1
Query: 571 AMDYACGSGADCKLVQPNGPCFQPNTVLAHASYAFNSYFQNTKNGGGTL*F 419
A+DYAC +GADC +QPNG CF PNTV AHASYAFNSYFQ G+ F
Sbjct: 38 ALDYACAAGADCAPIQPNGLCFLPNTVQAHASYAFNSYFQRAAMAPGSCNF 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,212,637
Number of Sequences: 1393205
Number of extensions: 11499760
Number of successful extensions: 35102
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 31998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34910
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
