Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008731A_C01 KMC008731A_c01
(784 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM52880.1| transcription activator [Arabidopsis thaliana] 44 0.003
dbj|BAB02326.1| gb|AAF17567.1~gene_id:MDC16.8~similar to unknown... 44 0.003
ref|NP_188012.1| hypothetical protein; protein id: At3g13960.1 [... 44 0.003
gb|AAF17567.1|AF201895_1 growth-regulating factor 1 [Oryza sativa] 33 3.6
>gb|AAM52880.1| transcription activator [Arabidopsis thaliana]
Length = 397
Score = 43.9 bits (102), Expect = 0.003
Identities = 21/40 (52%), Positives = 30/40 (74%), Gaps = 3/40 (7%)
Frame = -1
Query: 775 KENETTTQKPLHHFF-EDWPPK--NTDSWLDLSSNSRIPT 665
K++ +++K LHHFF EDW ++DSWLDLSS+SR+ T
Sbjct: 356 KDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395
>dbj|BAB02326.1| gb|AAF17567.1~gene_id:MDC16.8~similar to unknown protein
[Arabidopsis thaliana]
Length = 397
Score = 43.9 bits (102), Expect = 0.003
Identities = 21/40 (52%), Positives = 30/40 (74%), Gaps = 3/40 (7%)
Frame = -1
Query: 775 KENETTTQKPLHHFF-EDWPPK--NTDSWLDLSSNSRIPT 665
K++ +++K LHHFF EDW ++DSWLDLSS+SR+ T
Sbjct: 356 KDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 395
>ref|NP_188012.1| hypothetical protein; protein id: At3g13960.1 [Arabidopsis
thaliana]
Length = 396
Score = 43.9 bits (102), Expect = 0.003
Identities = 21/40 (52%), Positives = 30/40 (74%), Gaps = 3/40 (7%)
Frame = -1
Query: 775 KENETTTQKPLHHFF-EDWPPK--NTDSWLDLSSNSRIPT 665
K++ +++K LHHFF EDW ++DSWLDLSS+SR+ T
Sbjct: 355 KDSSESSKKSLHHFFGEDWAQNKNSSDSWLDLSSHSRLDT 394
>gb|AAF17567.1|AF201895_1 growth-regulating factor 1 [Oryza sativa]
Length = 396
Score = 33.5 bits (75), Expect = 3.6
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -1
Query: 772 ENETTTQKPLHHFFEDWP-PKNT-DSWLDLSSNSRI 671
++ QKPL HFF++WP KN+ SW+ L +++
Sbjct: 338 DHAAAAQKPLRHFFDEWPHEKNSKGSWMGLEGETQL 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 731,488,655
Number of Sequences: 1393205
Number of extensions: 16487778
Number of successful extensions: 42657
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42616
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
