Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007934A_C01 KMC007934A_c01
(725 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565553.1| putative GTP-binding protein (extra large); pro... 112 4e-24
gb|AAC19353.1| extra-large G-protein [Arabidopsis thaliana] 112 4e-24
pir||T01135 probable GTP-binding protein (extra large) [imported... 112 4e-24
ref|NP_174475.1| G-protein, putative; protein id: At1g31930.1 [A... 63 4e-09
ref|NP_195165.1| extra-large G-protein - like; protein id: At4g3... 62 6e-09
>ref|NP_565553.1| putative GTP-binding protein (extra large); protein id: At2g23460.1,
supported by cDNA: gi_15451169, supported by cDNA:
gi_3201679 [Arabidopsis thaliana] gi|11357318|pir||T51593
GTP-binding regulatory protein extra-large [validated] -
Arabidopsis thaliana gi|3201680|gb|AAC19352.1|
extra-large G-protein [Arabidopsis thaliana]
gi|20197006|gb|AAC23761.2| putative GTP-binding protein
(extra large) [Arabidopsis thaliana]
Length = 888
Score = 112 bits (281), Expect = 4e-24
Identities = 56/84 (66%), Positives = 66/84 (77%)
Frame = -2
Query: 724 HSNSINSNPSLGQLASHYIAVKFKRLYSSLTGRKLYVSPVKGLVPDSVDGALRYAKEILK 545
H S N NP+LGQLA H++AVKFKR YSSLTG+KL+VS K L P+SVD +L+ A EILK
Sbjct: 804 HRGSNNGNPTLGQLAFHFMAVKFKRFYSSLTGKKLFVSSSKSLDPNSVDSSLKLAMEILK 863
Query: 544 WNEERPNFSLSENSMYSTEASSFS 473
W+EER N +SE SMYSTE SSFS
Sbjct: 864 WSEERTNICMSEYSMYSTEPSSFS 887
>gb|AAC19353.1| extra-large G-protein [Arabidopsis thaliana]
Length = 888
Score = 112 bits (281), Expect = 4e-24
Identities = 56/84 (66%), Positives = 66/84 (77%)
Frame = -2
Query: 724 HSNSINSNPSLGQLASHYIAVKFKRLYSSLTGRKLYVSPVKGLVPDSVDGALRYAKEILK 545
H S N NP+LGQLA H++AVKFKR YSSLTG+KL+VS K L P+SVD +L+ A EILK
Sbjct: 804 HRGSNNGNPTLGQLAFHFMAVKFKRFYSSLTGKKLFVSSSKSLDPNSVDSSLKLAMEILK 863
Query: 544 WNEERPNFSLSENSMYSTEASSFS 473
W+EER N +SE SMYSTE SSFS
Sbjct: 864 WSEERTNICMSEYSMYSTEPSSFS 887
>pir||T01135 probable GTP-binding protein (extra large) [imported] - Arabidopsis
thaliana
Length = 901
Score = 112 bits (281), Expect = 4e-24
Identities = 56/84 (66%), Positives = 66/84 (77%)
Frame = -2
Query: 724 HSNSINSNPSLGQLASHYIAVKFKRLYSSLTGRKLYVSPVKGLVPDSVDGALRYAKEILK 545
H S N NP+LGQLA H++AVKFKR YSSLTG+KL+VS K L P+SVD +L+ A EILK
Sbjct: 817 HRGSNNGNPTLGQLAFHFMAVKFKRFYSSLTGKKLFVSSSKSLDPNSVDSSLKLAMEILK 876
Query: 544 WNEERPNFSLSENSMYSTEASSFS 473
W+EER N +SE SMYSTE SSFS
Sbjct: 877 WSEERTNICMSEYSMYSTEPSSFS 900
>ref|NP_174475.1| G-protein, putative; protein id: At1g31930.1 [Arabidopsis thaliana]
gi|25403136|pir||E86443 probable G-protein alpha subunit
[imported] - Arabidopsis thaliana
gi|12321289|gb|AAG50710.1|AC079041_3 G-protein, putative
[Arabidopsis thaliana]
gi|12321467|gb|AAG50792.1|AC074309_9 G-protein alpha
subunit, putative [Arabidopsis thaliana]
Length = 848
Score = 63.2 bits (152), Expect = 4e-09
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = -2
Query: 709 NSNPSLGQLASHYIAVKFKRLYSSLTGRKLYVSPVKGLVPDSVDGALRYAKEILKWNEER 530
N+ SL A Y+A+KFK LY S+TG+KL+V + +VD +Y +E+LKW+EE+
Sbjct: 762 NNVQSLAYQAYFYVAMKFKLLYFSITGQKLFVWQARARDRANVDEGFKYVREVLKWDEEK 821
Query: 529 PNFSLS---ENSMYSTEASS 479
L+ E+S YST+ SS
Sbjct: 822 EESYLNGGGEDSFYSTDMSS 841
>ref|NP_195165.1| extra-large G-protein - like; protein id: At4g34390.1 [Arabidopsis
thaliana] gi|7485317|pir||T04785 hypothetical protein
F10M10.160 - Arabidopsis thaliana
gi|4455184|emb|CAB36716.1| extra-large G-protein-like
[Arabidopsis thaliana] gi|7270389|emb|CAB80156.1|
extra-large G-protein-like [Arabidopsis thaliana]
Length = 838
Score = 62.4 bits (150), Expect = 6e-09
Identities = 43/87 (49%), Positives = 50/87 (57%), Gaps = 10/87 (11%)
Frame = -2
Query: 703 NPSLGQLASHYIAVKFKRLYSSLT------GR----KLYVSPVKGLVPDSVDGALRYAKE 554
NP + Q A HYI KFKRLY S+ GR KL+V V L D+VD ALRYA+E
Sbjct: 754 NPPMAQRAFHYIGYKFKRLYDSILEPVNMRGRSFKPKLFVCQVS-LESDTVDNALRYARE 812
Query: 553 ILKWNEERPNFSLSENSMYSTEASSFS 473
ILKW+ E + E S S EASS S
Sbjct: 813 ILKWHVEETSM-FQEMSTTSIEASSSS 838
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,701,626
Number of Sequences: 1393205
Number of extensions: 11512522
Number of successful extensions: 20859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20855
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
