Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005993A_C01 KMC005993A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179673.1| putative NADH-ubiquinone oxireductase; protein ... 60 1e-08
gb|AAL15652.1| NADH dehydrogenase-like protein [Medicago sativa] 60 2e-08
ref|NP_567283.1| coded for by A. thaliana cDNA W43435; protein i... 56 3e-07
pir||B85063 hypothetical protein AT4g05020 [imported] - Arabidop... 56 3e-07
gb|AAM63256.1| putative NADH dehydrogenase [Arabidopsis thaliana] 54 9e-07
>ref|NP_179673.1| putative NADH-ubiquinone oxireductase; protein id: At2g20800.1
[Arabidopsis thaliana] gi|25285262|pir||E84593 probable
NADH-ubiquinone oxireductase [imported] - Arabidopsis
thaliana gi|4454468|gb|AAD20915.1| putative
NADH-ubiquinone oxireductase [Arabidopsis thaliana]
Length = 582
Score = 60.5 bits (145), Expect = 1e-08
Identities = 30/42 (71%), Positives = 32/42 (75%), Gaps = 1/42 (2%)
Frame = -3
Query: 441 TAQVASQHGTYLADCVNRMELCEKYPEGPLRFRGT-RHCCKP 319
TAQVASQ G YLA C N+ME CEK PEGPLRFRG RH +P
Sbjct: 471 TAQVASQQGKYLAKCFNKMEKCEKKPEGPLRFRGEGRHRFQP 512
>gb|AAL15652.1| NADH dehydrogenase-like protein [Medicago sativa]
Length = 173
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/42 (73%), Positives = 32/42 (75%), Gaps = 1/42 (2%)
Frame = -3
Query: 441 TAQVASQHGTYLADCVNRMELCEKYPEGPLRFRGT-RHCCKP 319
TAQVASQ GTYLA C NRME EK PEGP+RFRG RH KP
Sbjct: 2 TAQVASQQGTYLAKCFNRMEEYEKNPEGPIRFRGEGRHRFKP 43
>ref|NP_567283.1| coded for by A. thaliana cDNA W43435; protein id: At4g05020.1,
supported by cDNA: gi_14532463 [Arabidopsis thaliana]
gi|14532464|gb|AAK63960.1| AT4g05020/T32N4_4
[Arabidopsis thaliana] gi|25090208|gb|AAN72252.1|
At4g05020/T32N4_4 [Arabidopsis thaliana]
Length = 582
Score = 55.8 bits (133), Expect = 3e-07
Identities = 27/42 (64%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 441 TAQVASQHGTYLADCVNRMELCEKYPEGPLRFRGT-RHCCKP 319
TAQVA+Q G YLA C +RME CEK PEGP+R RG RH +P
Sbjct: 471 TAQVAAQQGAYLAKCFDRMEECEKSPEGPIRMRGEGRHRFRP 512
>pir||B85063 hypothetical protein AT4g05020 [imported] - Arabidopsis thaliana
gi|5732076|gb|AAD48975.1|AF162444_7 contains similarity
to Pfam family PF00070 - Pyridine nucleotide-disulphide
oxidoreductase class-I; score=26.1, E=0.0008, N=1
[Arabidopsis thaliana] gi|7267261|emb|CAB81044.1|
contains similarity to Pfam family PF00070 - Pyridine
nucleotide-disulphide oxidoreductase class-I,
score=26.1, E=0.0008, N=1, coded for by A. thaliana cDNA
W43435~strong similarity to~Contains EF-hand
calcium-binding domain AA393-405~contains EST gb:W43435
[Arabidopsis thaliana]
Length = 583
Score = 55.8 bits (133), Expect = 3e-07
Identities = 27/42 (64%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 441 TAQVASQHGTYLADCVNRMELCEKYPEGPLRFRGT-RHCCKP 319
TAQVA+Q G YLA C +RME CEK PEGP+R RG RH +P
Sbjct: 472 TAQVAAQQGAYLAKCFDRMEECEKSPEGPIRMRGEGRHRFRP 513
>gb|AAM63256.1| putative NADH dehydrogenase [Arabidopsis thaliana]
Length = 571
Score = 54.3 bits (129), Expect = 9e-07
Identities = 32/67 (47%), Positives = 38/67 (55%), Gaps = 4/67 (5%)
Frame = -3
Query: 441 TAQVASQHGTYLADCVNRMELCEKYPEGPLRFR-GTRHCCKP---KH*AQIWQSL*EKAQ 274
TAQVA+Q G YLA C NRME C++ PEGP RFR G H +P KH Q ++A
Sbjct: 460 TAQVAAQQGAYLAKCFNRMEQCKELPEGPKRFRTGGHHQFRPFQYKHFGQFAPLGGDQAA 519
Query: 273 ASASCTW 253
A W
Sbjct: 520 AELPGDW 526
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,929,135
Number of Sequences: 1393205
Number of extensions: 10897979
Number of successful extensions: 33300
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 32669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33294
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
