Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005601A_C01 KMC005601A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175065.1| unknown protein; protein id: At1g43995.1 [Arabi... 45 7e-04
ref|NP_680357.1| similar to non-LTR reverse transcriptase, putat... 42 0.004
ref|NP_189754.1| non-LTR reverse transcriptase, putative; protei... 40 0.024
dbj|BAB03428.1| unnamed protein product [Oryza sativa (japonica ... 39 0.053
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 37 0.12
>ref|NP_175065.1| unknown protein; protein id: At1g43995.1 [Arabidopsis thaliana]
Length = 126
Score = 44.7 bits (104), Expect = 7e-04
Identities = 32/96 (33%), Positives = 39/96 (40%)
Frame = -2
Query: 492 WTPPSVGWVKLNTDGSFTRGSSLMGCGGLC*K**SDLFM*PCNNNFSF*DNWLFDSLLQD 313
W+ PS GW+KLNTDG+ +L GG+ L+D
Sbjct: 58 WSVPSEGWLKLNTDGASRGNPTLSTAGGV----------------------------LRD 89
Query: 312 RHGNWRAGFSSFEGAGDEVILVELLGVVRGLFLSRR 205
R G W GFS G + EL GV GLFL R
Sbjct: 90 REGEWLGGFSLNIGRRTAPV-AELWGVYYGLFLLGR 124
>ref|NP_680357.1| similar to non-LTR reverse transcriptase, putative; protein id:
At5g36905.1 [Arabidopsis thaliana]
Length = 633
Score = 42.4 bits (98), Expect = 0.004
Identities = 31/102 (30%), Positives = 39/102 (37%)
Frame = -2
Query: 495 RWTPPSVGWVKLNTDGSFTRGSSLMGCGGLC*K**SDLFM*PCNNNFSF*DNWLFDSLLQ 316
+WTPPS GW KLNTDG+ L GG +++
Sbjct: 451 KWTPPSTGWFKLNTDGASRGNPGLATAGG----------------------------VVR 482
Query: 315 DRHGNWRAGFSSFEGAGDEVILVELLGVVRGLFLSRRTGGRK 190
D G W GF G L EL GV GL ++ G R+
Sbjct: 483 DGEGQWCVGFVLNIGI-CSAPLAELWGVYYGLHIAWERGIRR 523
>ref|NP_189754.1| non-LTR reverse transcriptase, putative; protein id: At3g32110.1
[Arabidopsis thaliana]
Length = 1911
Score = 39.7 bits (91), Expect = 0.024
Identities = 28/95 (29%), Positives = 37/95 (38%)
Frame = -2
Query: 495 RWTPPSVGWVKLNTDGSFTRGSSLMGCGGLC*K**SDLFM*PCNNNFSF*DNWLFDSLLQ 316
RWTPP GW K+NTDG+ L GG +L+
Sbjct: 1742 RWTPPMEGWYKINTDGASRGNPGLASAGG----------------------------VLR 1773
Query: 315 DRHGNWRAGFSSFEGAGDEVILVELLGVVRGLFLS 211
+ G W GF+ G L EL GV GL+++
Sbjct: 1774 NSAGAWCGGFAVNIGR-CSAPLAELWGVYYGLYMA 1807
>dbj|BAB03428.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711836|dbj|BAB07935.1| P0512G09.17 [Oryza sativa
(japonica cultivar-group)]
Length = 245
Score = 38.5 bits (88), Expect = 0.053
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 492 WTPPSVGWVKLNTDGSFTRGSSLMGCG 412
WTPP +GWVK N DGSF + S G
Sbjct: 121 WTPPPMGWVKANVDGSFIQCSEAASAG 147
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 37.4 bits (85), Expect = 0.12
Identities = 27/101 (26%), Positives = 38/101 (36%)
Frame = -2
Query: 492 WTPPSVGWVKLNTDGSFTRGSSLMGCGGLC*K**SDLFM*PCNNNFSF*DNWLFDSLLQD 313
W P+ GWV +NTDG+ GG+ ++D
Sbjct: 508 WRKPAEGWVTMNTDGASHGNPGQATAGGV----------------------------IRD 539
Query: 312 RHGNWRAGFSSFEGAGDEVILVELLGVVRGLFLSRRTGGRK 190
HG+W GF+ G L EL GV GL ++ G R+
Sbjct: 540 EHGSWLVGFALNIGV-CSAPLAELWGVYYGLVVAWERGWRR 579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,436,355
Number of Sequences: 1393205
Number of extensions: 10080811
Number of successful extensions: 27716
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 25787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27610
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
