Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005574A_C01 KMC005574A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72067.1| eukaryotic initiation factor 4, eIF4-like protein... 107 1e-22
dbj|BAB08857.1| eukaryotic initiation factor 4, eIF4-like protei... 107 1e-22
ref|NP_200595.1| eukaryotic initiation factor 4, eIF4-like prote... 107 1e-22
gb|AAN17444.1| eukaryotic initiation factor 4, eIF4-like protein... 107 1e-22
sp|Q03387|IF41_WHEAT Eukaryotic initiation factor (iso)4F subuni... 76 2e-13
>gb|AAN72067.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 776
Score = 107 bits (267), Expect = 1e-22
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 6/96 (6%)
Frame = +2
Query: 281 MQEGDQTVLSLRPGGGRGTRLLAPRFDSSSAS-----SADLPLLRPHGAA-LPNFSIKAG 442
MQ+GDQTVLSLRPGGGRG RL SSS S S+DLPLLRPHG A +F K G
Sbjct: 1 MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60
Query: 443 DSRLEGRERIRYTRDQLLQLREAVETLDDMLKIKQD 550
DSR +GRER++YTR+QLL+L+E + D++L+++++
Sbjct: 61 DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRE 96
>dbj|BAB08857.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 751
Score = 107 bits (267), Expect = 1e-22
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 6/96 (6%)
Frame = +2
Query: 281 MQEGDQTVLSLRPGGGRGTRLLAPRFDSSSAS-----SADLPLLRPHGAA-LPNFSIKAG 442
MQ+GDQTVLSLRPGGGRG RL SSS S S+DLPLLRPHG A +F K G
Sbjct: 1 MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60
Query: 443 DSRLEGRERIRYTRDQLLQLREAVETLDDMLKIKQD 550
DSR +GRER++YTR+QLL+L+E + D++L+++++
Sbjct: 61 DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRE 96
>ref|NP_200595.1| eukaryotic initiation factor 4, eIF4-like protein; protein id:
At5g57870.1, supported by cDNA: gi_15810454, supported
by cDNA: gi_20258962 [Arabidopsis thaliana]
gi|15810455|gb|AAL07115.1| putative eukaryotic
initiation factor eIF4 [Arabidopsis thaliana]
gi|20258963|gb|AAM14197.1| putative eukaryotic
initiation factor 4 [Arabidopsis thaliana]
Length = 780
Score = 107 bits (267), Expect = 1e-22
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 6/96 (6%)
Frame = +2
Query: 281 MQEGDQTVLSLRPGGGRGTRLLAPRFDSSSAS-----SADLPLLRPHGAA-LPNFSIKAG 442
MQ+GDQTVLSLRPGGGRG RL SSS S S+DLPLLRPHG A +F K G
Sbjct: 1 MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60
Query: 443 DSRLEGRERIRYTRDQLLQLREAVETLDDMLKIKQD 550
DSR +GRER++YTR+QLL+L+E + D++L+++++
Sbjct: 61 DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRE 96
>gb|AAN17444.1| eukaryotic initiation factor 4, eIF4-like protein [Arabidopsis
thaliana] gi|28059736|gb|AAO30087.1| eukaryotic
initiation factor 4, eIF4-like protein [Arabidopsis
thaliana]
Length = 780
Score = 107 bits (267), Expect = 1e-22
Identities = 54/96 (56%), Positives = 71/96 (73%), Gaps = 6/96 (6%)
Frame = +2
Query: 281 MQEGDQTVLSLRPGGGRGTRLLAPRFDSSSAS-----SADLPLLRPHGAA-LPNFSIKAG 442
MQ+GDQTVLSLRPGGGRG RL SSS S S+DLPLLRPHG A +F K G
Sbjct: 1 MQQGDQTVLSLRPGGGRGNRLFGSSSSSSSLSFGSLSSSDLPLLRPHGGAPASSFPFKGG 60
Query: 443 DSRLEGRERIRYTRDQLLQLREAVETLDDMLKIKQD 550
DSR +GRER++YTR+QLL+L+E + D++L+++++
Sbjct: 61 DSRFDGRERVKYTREQLLELKETTQLSDEILRVQRE 96
>sp|Q03387|IF41_WHEAT Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F
P82-34) gi|452440|gb|AAA16209.1| initiation factor
(iso)4f p82 subunit
Length = 788
Score = 76.3 bits (186), Expect = 2e-13
Identities = 42/90 (46%), Positives = 57/90 (62%), Gaps = 4/90 (4%)
Frame = +2
Query: 293 DQTVLSLRPGGG----RGTRLLAPRFDSSSASSADLPLLRPHGAALPNFSIKAGDSRLEG 460
DQ V+SLRPGGG RG RL AP F +++ S D LRPHG S + GD E
Sbjct: 4 DQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDF--LRPHGGGASGVS-RIGDLHSES 60
Query: 461 RERIRYTRDQLLQLREAVETLDDMLKIKQD 550
RER+RY+RDQLL LR+ + + +L+++Q+
Sbjct: 61 RERVRYSRDQLLDLRKITDVTEQILRLQQE 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,945,413
Number of Sequences: 1393205
Number of extensions: 11523213
Number of successful extensions: 56754
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 49992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56137
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
