Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005394A_C01 KMC005394A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084808.1| photosystem I subunit VIII [Lotus japonicus] gi... 70 2e-11
ref|NP_051069.1| PSI I subunit VIII [Arabidopsis thaliana] gi|66... 62 5e-09
sp|P49159|PSAI_SOYBN Photosystem I reaction center subunit VIII ... 61 7e-09
ref|NP_039395.1| photosystem I subunit VIII [Oryza sativa (japon... 61 9e-09
gb|AAM08608.1|AC092750_42 Hypothetical protein ORF36 from chromo... 61 9e-09
>ref|NP_084808.1| photosystem I subunit VIII [Lotus japonicus]
gi|18202724|sp|Q9BBS0|PSAI_LOTJA Photosystem I reaction
center subunit VIII (PSI-I) gi|13358989|dbj|BAB33206.1|
PSI I protein [Lotus japonicus]
Length = 34
Score = 69.7 bits (169), Expect = 2e-11
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -1
Query: 342 MTNLPSIFVPLVGLVFPAMAMASLFLYLQKNKIF 241
MTNLPSIFVPLVGLVFPAMAMASLFLYLQKNKIF
Sbjct: 1 MTNLPSIFVPLVGLVFPAMAMASLFLYLQKNKIF 34
>ref|NP_051069.1| PSI I subunit VIII [Arabidopsis thaliana]
gi|6685790|sp|P56768|PSAI_ARATH Photosystem I reaction
center subunit VIII (PSI-I) gi|5881704|dbj|BAA84395.1|
PSI I protein [Arabidopsis thaliana]
Length = 37
Score = 61.6 bits (148), Expect = 5e-09
Identities = 29/32 (90%), Positives = 32/32 (99%)
Frame = -1
Query: 336 NLPSIFVPLVGLVFPAMAMASLFLYLQKNKIF 241
NLPSIFVPLVGLVFPA+AMASLFL++QKNKIF
Sbjct: 6 NLPSIFVPLVGLVFPAIAMASLFLHIQKNKIF 37
>sp|P49159|PSAI_SOYBN Photosystem I reaction center subunit VIII (PSI-I)
gi|7443133|pir||T06342 photosystem I protein psaI -
soybean chloroplast gi|984310|gb|AAA80644.1| photosystem
I component
Length = 34
Score = 61.2 bits (147), Expect = 7e-09
Identities = 29/34 (85%), Positives = 32/34 (93%)
Frame = -1
Query: 342 MTNLPSIFVPLVGLVFPAMAMASLFLYLQKNKIF 241
M N PSIFVPLVGLVFPA+AMASLFL++QKNKIF
Sbjct: 1 MINFPSIFVPLVGLVFPAIAMASLFLHVQKNKIF 34
>ref|NP_039395.1| photosystem I subunit VIII [Oryza sativa (japonica cultivar-group)]
gi|131205|sp|P12186|PSAI_ORYSA Photosystem I reaction
center subunit VIII (PSI-I) gi|72677|pir||A1RZI
photosystem I protein psaI - rice chloroplast
gi|11996|emb|CAA33957.1| ORF36 [Oryza sativa (japonica
cultivar-group)] gi|226617|prf||1603356AP photosystem I
small peptide
Length = 36
Score = 60.8 bits (146), Expect = 9e-09
Identities = 29/31 (93%), Positives = 31/31 (99%)
Frame = -1
Query: 336 NLPSIFVPLVGLVFPAMAMASLFLYLQKNKI 244
NLPSIFVPLVGLVFPA+AMASLFLY+QKNKI
Sbjct: 5 NLPSIFVPLVGLVFPAIAMASLFLYVQKNKI 35
>gb|AAM08608.1|AC092750_42 Hypothetical protein ORF36 from chromosome 10 chloroplast insertion
[Oryza sativa (japonica cultivar-group)]
gi|21327368|gb|AAM48273.1|AC122148_26 Hypothetical
protein ORF36 from chromosome 10 chloroplast insertion
[Oryza sativa (japonica cultivar-group)]
Length = 35
Score = 60.8 bits (146), Expect = 9e-09
Identities = 29/31 (93%), Positives = 31/31 (99%)
Frame = -1
Query: 336 NLPSIFVPLVGLVFPAMAMASLFLYLQKNKI 244
NLPSIFVPLVGLVFPA+AMASLFLY+QKNKI
Sbjct: 4 NLPSIFVPLVGLVFPAIAMASLFLYVQKNKI 34
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,755,816
Number of Sequences: 1393205
Number of extensions: 9004907
Number of successful extensions: 19233
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 18018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19106
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
