Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004430A_C01 KMC004430A_c01
(776 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52458.1| similar to Dictyostelium discoideum (Slime mold).... 42 0.010
dbj|BAB46880.1| hypothetical protein [Macaca fascicularis] 41 0.017
gb|AAO50991.1| hypothetical protein [Dictyostelium discoideum] 41 0.017
gb|AAO51859.1| similar to Homo sapiens (Human). Mucin 2 precurso... 40 0.029
gb|AAO50913.1| similar to putative protein; protein id: At3g4434... 40 0.038
>gb|AAO52458.1| similar to Dictyostelium discoideum (Slime mold). Hypothetical
127.0 kDa protein
Length = 918
Score = 42.0 bits (97), Expect = 0.010
Identities = 33/119 (27%), Positives = 48/119 (39%), Gaps = 6/119 (5%)
Frame = +3
Query: 132 PD*PKGWQNPSPNEVQTGLEVKPPITKDKTLKPWKIPMD---QYPKNISYQAQTNPTLAR 302
PD P Q P+P E T + P T+ T P + P + Q P Q T
Sbjct: 473 PDPPTPTQTPTPTETPTETPTQTP-TQTPTQTPTQTPTETPTQTPTETPTQTPTETPTQT 531
Query: 303 LNHTNTEEPTPSGTETQRQA---T*TQQKQSHNSTSALKDTSPTPNQRQQDHAEQDAHG 470
T T+ PT + TET + T +Q +S + +PTP +R Q + + G
Sbjct: 532 PTETPTQTPTETPTETPTETPSQTPSQTPSESSSETPTPTPTPTPTKRPQCPGKPECGG 590
>dbj|BAB46880.1| hypothetical protein [Macaca fascicularis]
Length = 553
Score = 41.2 bits (95), Expect = 0.017
Identities = 48/194 (24%), Positives = 66/194 (33%), Gaps = 11/194 (5%)
Frame = +3
Query: 132 PD*PKGWQNPSPNEVQTGLEVKPPITKDKTLKPWKIPMDQYPKNISYQAQTNPTLAR--- 302
P P G P + T VKPP+ T KP P+ P+L +
Sbjct: 332 PAQPPGLTKPLAQQPGT---VKPPVQPPGTAKPPAQPLGPAKSPAQQTGSEKPSLEQPGP 388
Query: 303 --------LNHTNTEEPTPSGTETQRQAT*TQQKQSHNSTSALKDTSPTPNQRQQDHAEQ 458
+ T ++P P+ TQ+ T Q S K PT QQ
Sbjct: 389 KTLAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQSGLQSPAKAPGPTKTPAQQ----- 443
Query: 459 DAHG*KLKNLNPNKPITAAYRIGSASPM*REASLTLTPKRLYGAGQKPPHHQTNQKSPPT 638
P K A + G A P ++ T P +L G KPP Q + PP+
Sbjct: 444 ---------AGPGK--IPAQQAGPAKPSAQQTGPTRLPSQLPGPA-KPPSQQPSSAKPPS 491
Query: 639 NP*EPVTKAHPYQQ 680
+P + P QQ
Sbjct: 492 Q--QPGSAKPPPQQ 503
>gb|AAO50991.1| hypothetical protein [Dictyostelium discoideum]
Length = 1483
Score = 41.2 bits (95), Expect = 0.017
Identities = 54/222 (24%), Positives = 81/222 (36%), Gaps = 7/222 (3%)
Frame = +3
Query: 66 NNNNNKIGNVEKQPLSTTWVQ*PD*PKGWQNPSPNEVQTGLEVKPPI-TKDKTLKPWKIP 242
NNNNN P S+T + P P+PN V T + P T P
Sbjct: 961 NNNNNNTSMNPPTPNSSTSMNPPTPNTSMNPPTPNTVNTSMNPPTPTPATPSTPSTMMNP 1020
Query: 243 MDQYPKNISYQAQTNPTLARLNHTNT------EEPTPSGTETQRQAT*TQQKQSHNSTSA 404
+IS + + PT T T +E P + + ++K+
Sbjct: 1021 PTPVTNSISTSSSSVPTTTTTTTTTTTEKESKKESKPKKLTKKEKEKLEKEKEKEKEKEK 1080
Query: 405 LKDTSPTPNQRQQDHAEQDAHG*KLKNLNPNKPITAAYRIGSASPM*REASLTLTPKRLY 584
K + ++ + E+D+ KL N + +TA+ I S SP + + T
Sbjct: 1081 KKKSKKDKDKEKDKEKEKDSENKKLS--NSSGAVTAS--IISESPTAASLTTSTTATATM 1136
Query: 585 GAGQKPPHHQTNQKSPPTNP*EPVTKAHPYQQSPAILTQSEL 710
+PP NQ PPT P + V P SP I Q+ L
Sbjct: 1137 TTTTQPPVLVPNQ--PPT-PNQLVNSMSP-SPSPTIQQQNIL 1174
>gb|AAO51859.1| similar to Homo sapiens (Human). Mucin 2 precursor (Intestinal
mucin 2) [Dictyostelium discoideum]
Length = 709
Score = 40.4 bits (93), Expect = 0.029
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 153 QNPSPNEVQTGLEVKPPITKDKTLKPWKIPMDQYPKNISYQAQT-NPTLARLNHTNTEEP 329
Q P+P + T + P T+ T P + P P QT PT T T P
Sbjct: 384 QTPTPTQTPTQTPTQTPTTQTPTPTPTQTPT---PTQTPTPTQTPTPT-----PTQTHTP 435
Query: 330 TPSGTETQRQA-T*TQQKQSHNSTSALKDTSPTPNQRQ 440
TP+ T+TQ Q T TQ + S + + + +P P Q Q
Sbjct: 436 TPTPTQTQTQTQTQTQTQNSTQTQTPTQTQTPKPTQTQ 473
Score = 33.5 bits (75), Expect = 3.5
Identities = 39/174 (22%), Positives = 53/174 (30%)
Frame = +3
Query: 141 PKGWQNPSPNEVQTGLEVKPPITKDKTLKPWKIPMDQYPKNISYQAQTNPTLARLNHTNT 320
P Q P+P QT P + + Q QT T T
Sbjct: 419 PTPTQTPTPTPTQTHTPTPTPTQTQTQTQTQTQTQNSTQTQTPTQTQTPKPTQTQTQTQT 478
Query: 321 EEPTPSGTETQRQAT*TQQKQSHNSTSALKDTSPTPNQRQQDHAEQDAHG*KLKNLNPNK 500
TP+ T+TQ Q Q+ ST PT Q Q Q + K P +
Sbjct: 479 PTQTPTQTQTQTQTQTQTPTQTQTST-------PTQTQTQTPTQTQTPKPTQTKTPTPTQ 531
Query: 501 PITAAYRIGSASPM*REASLTLTPKRLYGAGQKPPHHQTNQKSPPTNP*EPVTK 662
T + + T TPK + Q P QT + P + T+
Sbjct: 532 TQT------------QTPTQTQTPKPIQTQTQTPTQTQTPTPTQTQTPTQTQTQ 573
>gb|AAO50913.1| similar to putative protein; protein id: At3g44340.1, supported by
cDNA: gi_11229585 [Arabidopsis thaliana] [Dictyostelium
discoideum]
Length = 1150
Score = 40.0 bits (92), Expect = 0.038
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 22/198 (11%)
Frame = +3
Query: 153 QNPSPNEVQTGLEVKPPITKDKTLKPWKIPMDQYP---KNISYQAQTNPTLARLNHTNTE 323
Q P N + + + PPIT + + P Q P N YQ TN + +N+
Sbjct: 172 QQPQTNSLSSPTQPPPPITNNTSAPPQPTGYSQPPPMTNNTGYQQTTNTSQPPMNNYQQY 231
Query: 324 EPT-PSGTETQRQAT*TQQKQSHNSTSALKDTSPTP---NQRQQDHAEQDAHG*KLKNLN 491
P PSG + +Q Q +Q + P Q+QQ +Q + +
Sbjct: 232 SPNQPSGVKMYQQPQSQQSQQPQQPQQYQYNQQPPQQPYGQQQQQQQQQQQQQQQQQQQP 291
Query: 492 PNKPI---TAAYRIGSASPM*REASLTL-----TPKRLYGAGQ-----KPPH--HQTNQK 626
P +P + +++P+ +L+L P++ YG Q +PP Q Q+
Sbjct: 292 PQQPYGQQPQQQQQWNSNPVPGLQNLSLGPNNQQPQQQYGQPQQQQYGQPPFVGQQQQQQ 351
Query: 627 SPPTNP*EPVTKAHPYQQ 680
P P +P + P QQ
Sbjct: 352 QQPWQPQQP--QQQPNQQ 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 773,631,669
Number of Sequences: 1393205
Number of extensions: 19310397
Number of successful extensions: 77107
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 64037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74438
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
