Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003497A_C01 KMC003497A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191256.1| bHLH protein; protein id: At3g56970.1, supporte... 58 8e-08
ref|NP_191257.1| bHLH protein; protein id: At3g56980.1, supporte... 58 8e-08
ref|NP_181657.1| bHLH protein; protein id: At2g41240.1, supporte... 55 9e-07
ref|NP_196035.1| myc - like protein; protein id: At5g04150.1 [Ar... 48 1e-04
dbj|BAB64701.1| P0431G06.12 [Oryza sativa (japonica cultivar-gro... 46 3e-04
>ref|NP_191256.1| bHLH protein; protein id: At3g56970.1, supported by cDNA:
gi_20127033 [Arabidopsis thaliana]
gi|11282360|pir||T47757 hypothetical protein F24I3.50 -
Arabidopsis thaliana gi|6911867|emb|CAB72167.1| putative
protein [Arabidopsis thaliana]
gi|20127034|gb|AAM10940.1|AF488576_1 putative bHLH
transcription factor [Arabidopsis thaliana]
Length = 253
Score = 58.2 bits (139), Expect = 8e-08
Identities = 30/89 (33%), Positives = 57/89 (63%), Gaps = 2/89 (2%)
Frame = -1
Query: 591 VSNSWLNDTEAAIHISSYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNLHFQ 412
VS + L D E + +SS + H+ + +S +L +E +G++L++ SS+++ G R+FY LH Q
Sbjct: 165 VSATRLGDNEVMVQVSSSKIHNFS-ISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQ 223
Query: 411 VEKTQ--RLEADILTQKLLSIYEKKQRMF 331
VE ++ + L++++L +YEK + F
Sbjct: 224 VENMDDYKINCEELSERMLYLYEKCENSF 252
>ref|NP_191257.1| bHLH protein; protein id: At3g56980.1, supported by cDNA:
gi_20127035 [Arabidopsis thaliana]
gi|11282361|pir||T47758 hypothetical protein F24I3.60 -
Arabidopsis thaliana gi|6911868|emb|CAB72168.1| putative
protein [Arabidopsis thaliana]
gi|20127036|gb|AAM10941.1|AF488577_1 putative bHLH
transcription factor [Arabidopsis thaliana]
Length = 258
Score = 58.2 bits (139), Expect = 8e-08
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = -1
Query: 591 VSNSWLNDTEAAIHISSYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNLHFQ 412
VS + L D E + ISS + H+ + +S +L LE + ++L++ SS+++ G R+FY LH Q
Sbjct: 170 VSATRLGDNEVMVQISSSKIHNFS-ISNVLSGLEEDRFVLVDMSSSRSQGERLFYTLHLQ 228
Query: 411 VEKTQ--RLEADILTQKLLSIYEK 346
VEK + +L + L+Q++L +YE+
Sbjct: 229 VEKIENYKLNCEELSQRMLYLYEE 252
>ref|NP_181657.1| bHLH protein; protein id: At2g41240.1, supported by cDNA:
gi_18491252 [Arabidopsis thaliana]
gi|25352412|pir||E84839 hypothetical protein At2g41240
[imported] - Arabidopsis thaliana
gi|3894198|gb|AAC78547.1| hypothetical protein
[Arabidopsis thaliana] gi|18491253|gb|AAL69451.1|
At2g41240/F13H10.21 [Arabidopsis thaliana]
Length = 242
Score = 54.7 bits (130), Expect = 9e-07
Identities = 29/82 (35%), Positives = 53/82 (64%)
Frame = -1
Query: 591 VSNSWLNDTEAAIHISSYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNLHFQ 412
VS++ L++TE + ISS + K +L +E +G +L+ ASS+++ G R+FY++H Q
Sbjct: 157 VSSTRLSETEVMVQISSLQTE-KCSFGNVLSGVEEDGLVLVGASSSRSHGERLFYSMHLQ 215
Query: 411 VEKTQRLEADILTQKLLSIYEK 346
+ K ++ ++ L +LL +YEK
Sbjct: 216 I-KNGQVNSEELGDRLLYLYEK 236
>ref|NP_196035.1| myc - like protein; protein id: At5g04150.1 [Arabidopsis thaliana]
gi|9955570|emb|CAC05497.1| myc-like protein [Arabidopsis
thaliana] gi|26185711|emb|CAD58594.1| putative bHLH
transcription factor [Arabidopsis thaliana]
Length = 240
Score = 47.8 bits (112), Expect = 1e-04
Identities = 26/77 (33%), Positives = 46/77 (58%)
Frame = -1
Query: 591 VSNSWLNDTEAAIHISSYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNLHFQ 412
++ +WL DTE A+ I++ + T +S++LL LE NG +++ SS+ + RIFY LH Q
Sbjct: 161 IAANWLTDTEIAVQIATSKW---TSVSDMLLRLEENGLNVISVSSSVSSTARIFYTLHLQ 217
Query: 411 VEKTQRLEADILTQKLL 361
+ ++ + L +L
Sbjct: 218 MRGDCKVRLEELINGML 234
>dbj|BAB64701.1| P0431G06.12 [Oryza sativa (japonica cultivar-group)]
Length = 248
Score = 46.2 bits (108), Expect = 3e-04
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = -1
Query: 594 VVSNSWLNDTEAAIHIS--SYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNL 421
+VS + +ND E + +S S A PLS+ + LEN G +++S++ FG R FY++
Sbjct: 159 IVSATCINDMEIMVQVSLLSNVAGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSI 218
Query: 420 HFQ-VEKTQRLEADILTQKLLSIYEKKQRM 334
H Q E T E ++L + K ++
Sbjct: 219 HLQRSEGTINEECPAFCERLEKVVRNKAKL 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,034,844
Number of Sequences: 1393205
Number of extensions: 8259317
Number of successful extensions: 13329
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13328
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
