Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002726A_C03 KMC002726A_c03
(784 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO50991.1| hypothetical protein [Dictyostelium discoideum] 39 0.065
pir||B86292 F7H2.12 protein - Arabidopsis thaliana gi|8927657|gb... 39 0.11
ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [... 39 0.11
gb|EAA06239.1| agCP13210 [Anopheles gambiae str. PEST] 38 0.14
ref|NP_721381.1| hypothetical protein [Streptococcus mutans UA15... 38 0.14
>gb|AAO50991.1| hypothetical protein [Dictyostelium discoideum]
Length = 1483
Score = 39.3 bits (90), Expect = 0.065
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 2/176 (1%)
Frame = +1
Query: 112 NILSQHGYSNQRNRKSAKQISPTTTSQTPQNLPKTSKQPNIYPCKNRFKLSKLKTLQQNT 291
+I+S+ + + + TTT+Q P +P PN N S T+QQ
Sbjct: 1115 SIISESPTAASLTTSTTATATMTTTTQPPVLVPNQPPTPN--QLVNSMSPSPSPTIQQQN 1172
Query: 292 QFIELKLEPTKFSK*RNR*K*KLDIIRIQPRSQQASSSNTADRPPPHQRQ*GKKH*GRKE 471
+++P +IQP+ Q S +P PHQ+Q
Sbjct: 1173 ILPTQQIQP-----------------QIQPQQQIQSPQQQFQQPQPHQQQ---------- 1205
Query: 472 TVATTPLA*PMQQRDDQNLTPPRSTTVYVWQRNQ--QPKPIQKRQKTNKRHHHPPQ 633
P P QQ++ +L PP+ Q Q Q + +Q++Q + PPQ
Sbjct: 1206 --FQQPQPQPQQQQNISHLQPPQILQQQQQQIQQQLQQQQLQQQQLQQQLQQLPPQ 1259
>pir||B86292 F7H2.12 protein - Arabidopsis thaliana
gi|8927657|gb|AAF82148.1|AC034256_12 EST gb|N38213 comes
from this gene. [Arabidopsis thaliana]
Length = 1366
Score = 38.5 bits (88), Expect = 0.11
Identities = 56/245 (22%), Positives = 98/245 (39%), Gaps = 31/245 (12%)
Frame = +1
Query: 112 NILSQHGYSNQRNRKSAKQISPTTTSQTPQNLPKTSKQPNIYPCKNRFKLSKLKTLQQNT 291
++L H Q+N Q+ +SQ P +P ++ QP+ N L L T QQ++
Sbjct: 282 SLLPSHIQQQQQNVLQPNQLH---SSQQP-GVPTSATQPSTV---NSAPLQGLHTNQQSS 334
Query: 292 QFIELKLEPTKFSK*RNR*K*KLDIIRIQPRSQQASSSNTADRPPPHQ------------ 435
+L + T S R + ++R P+SQQAS + P Q
Sbjct: 335 P--QLSSQQTTQSMLRQH---QSSMLRQHPQSQQASGIHQQQSSLPQQSISPLQQQPTQL 389
Query: 436 -RQ*GKKH*G-RKETVATTPLA*PMQQRDDQNLTPPRSTTVYVWQRNQQPKPIQKRQKTN 609
RQ G +++ + + MQQ+ Q L ++ + + Q+ Q +P+Q+ Q+
Sbjct: 390 MRQQAANSSGIQQKQMMGQHVVGDMQQQHQQRLLNQQNNVMNIQQQQSQQQPLQQPQQQQ 449
Query: 610 KRH-----------------HHPPQSTCSAGAQTQQPPNKNTTIKARLXNNKTPKNXRLV 738
K+ H P T S A QQP + + +++ N+ N V
Sbjct: 450 KQQPPAQQQLMSQQNSLQATHQNPLGTQSNVAGLQQP--QQQMLNSQVGNSSLQNNQHSV 507
Query: 739 ALMKQ 753
++ Q
Sbjct: 508 HMLSQ 512
>ref|NP_173030.1| hypothetical protein; protein id: At1g15780.1 [Arabidopsis
thaliana]
Length = 1335
Score = 38.5 bits (88), Expect = 0.11
Identities = 56/245 (22%), Positives = 98/245 (39%), Gaps = 31/245 (12%)
Frame = +1
Query: 112 NILSQHGYSNQRNRKSAKQISPTTTSQTPQNLPKTSKQPNIYPCKNRFKLSKLKTLQQNT 291
++L H Q+N Q+ +SQ P +P ++ QP+ N L L T QQ++
Sbjct: 251 SLLPSHIQQQQQNVLQPNQLH---SSQQP-GVPTSATQPSTV---NSAPLQGLHTNQQSS 303
Query: 292 QFIELKLEPTKFSK*RNR*K*KLDIIRIQPRSQQASSSNTADRPPPHQ------------ 435
+L + T S R + ++R P+SQQAS + P Q
Sbjct: 304 P--QLSSQQTTQSMLRQH---QSSMLRQHPQSQQASGIHQQQSSLPQQSISPLQQQPTQL 358
Query: 436 -RQ*GKKH*G-RKETVATTPLA*PMQQRDDQNLTPPRSTTVYVWQRNQQPKPIQKRQKTN 609
RQ G +++ + + MQQ+ Q L ++ + + Q+ Q +P+Q+ Q+
Sbjct: 359 MRQQAANSSGIQQKQMMGQHVVGDMQQQHQQRLLNQQNNVMNIQQQQSQQQPLQQPQQQQ 418
Query: 610 KRH-----------------HHPPQSTCSAGAQTQQPPNKNTTIKARLXNNKTPKNXRLV 738
K+ H P T S A QQP + + +++ N+ N V
Sbjct: 419 KQQPPAQQQLMSQQNSLQATHQNPLGTQSNVAGLQQP--QQQMLNSQVGNSSLQNNQHSV 476
Query: 739 ALMKQ 753
++ Q
Sbjct: 477 HMLSQ 481
>gb|EAA06239.1| agCP13210 [Anopheles gambiae str. PEST]
Length = 513
Score = 38.1 bits (87), Expect = 0.14
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = +1
Query: 421 PPPHQRQ*GKKH*GRKETVATTPLA*PMQQRDDQNLTPPRSTTVYVWQRNQQPKPIQKRQ 600
PPP + GK+ GRK TT QQ+ D PPR QR + P Q+RQ
Sbjct: 83 PPPPANEQGKRKEGRKAKARTT-----KQQQADGEEQPPRKKRAQSKQRQKPEPPAQQRQ 137
Query: 601 KTNKRHHHP 627
+ +R P
Sbjct: 138 PSEQRTKVP 146
>ref|NP_721381.1| hypothetical protein [Streptococcus mutans UA159]
gi|24377359|gb|AAN58687.1|AE014938_3 hypothetical
protein [Streptococcus mutans UA159]
Length = 171
Score = 38.1 bits (87), Expect = 0.14
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Frame = +3
Query: 120 LSTWVQ*PTQPKVGKTDQPYNNLPNTTKPPKNL*TTQHLPVQE*IQAE--QTKNPTTKHT 293
++ W K+G T Q +NL N+ NL +TQ+L ++ I E T NP K
Sbjct: 25 IANWTAKELGAKIGVTKQTISNLENSNGQTNNLNSTQYLAIRSVIDHEITITDNPVLK-- 82
Query: 294 IHRAKTGAYKIQQ----IEK*IKIKTRHNKNPAEITASKQLQHS*Q-TTSSPTPVRKKTL 458
KT Y Q I+ IK+K+ + A++ A+ + ++ Q S T + +KT+
Sbjct: 83 ----KTMDYLFNQEQDNIDSNIKLKSAKDIKIAQLGAASKAAYTSQIKNSEQTNLERKTM 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 732,294,187
Number of Sequences: 1393205
Number of extensions: 17966733
Number of successful extensions: 76833
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 60455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72018
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
