Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000409A_C01 KCC000409A_c01
(1178 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD03734.1| light harvesting complex I protein precursor [Chl... 272 9e-72
gb|AAD03733.1| light harvesting complex I protein precursor [Chl... 272 9e-72
pir||S31845 chlorophyll a/b-binding protein I-20 precursor - Chl... 272 9e-72
gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI... 218 2e-55
pir||PQ0764 chlorophyll a/b-binding protein type Ib, 21K chain p... 109 5e-36
>gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
Length = 228
Score = 272 bits (695), Expect = 9e-72
Identities = 145/196 (73%), Positives = 150/196 (75%), Gaps = 7/196 (3%)
Frame = +2
Query: 182 PARTPPCWLPDDLPGNYGFDPLVSGQGACFPEAASPRARSSTVAGPCWALPAPWLWSCWA 361
P P WLPDDLPGNYGFDPL G+ A+ R S V WA+ L +
Sbjct: 41 PGSDAPAWLPDDLPGNYGFDPLSLGK----EPASLKRFTESEVIHGRWAM----LGVAGS 92
Query: 362 TATGTM-------PPCGPVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 520
A + P VNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV
Sbjct: 93 LAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 152
Query: 521 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 700
YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN
Sbjct: 153 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 212
Query: 701 PWGANFATNGISVPFF 748
PWGANFATNGISVPFF
Sbjct: 213 PWGANFATNGISVPFF 228
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/73 (58%), Positives = 44/73 (59%)
Frame = +3
Query: 60 MALSMRTLSARTAAPRGFSGRRVAAVSNGQPRDHEGRQLAARLGRPRAGCPMTCRATTAS 239
MALSMRTLSARTAAPRGFSGRRVAAVSNG + P A P
Sbjct: 1 MALSMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAP-AWLPDDLPGNYGF 59
Query: 240 TPWSLGKEPASLK 278
P SLGKEPASLK
Sbjct: 60 DPLSLGKEPASLK 72
>gb|AAD03733.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
Length = 228
Score = 272 bits (695), Expect = 9e-72
Identities = 145/196 (73%), Positives = 150/196 (75%), Gaps = 7/196 (3%)
Frame = +2
Query: 182 PARTPPCWLPDDLPGNYGFDPLVSGQGACFPEAASPRARSSTVAGPCWALPAPWLWSCWA 361
P P WLPDDLPGNYGFDPL G+ A+ R S V WA+ L +
Sbjct: 41 PGSDAPAWLPDDLPGNYGFDPLSLGK----EPASLKRFTESEVIHGRWAM----LGLAGS 92
Query: 362 TATGTM-------PPCGPVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 520
A + P VNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV
Sbjct: 93 LAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 152
Query: 521 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 700
YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN
Sbjct: 153 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 212
Query: 701 PWGANFATNGISVPFF 748
PWGANFATNGISVPFF
Sbjct: 213 PWGANFATNGISVPFF 228
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/73 (58%), Positives = 44/73 (59%)
Frame = +3
Query: 60 MALSMRTLSARTAAPRGFSGRRVAAVSNGQPRDHEGRQLAARLGRPRAGCPMTCRATTAS 239
MALSMRTLSARTAAPRGFSGRRVAAVSNG + P A P
Sbjct: 1 MALSMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAP-AWLPDDLPGNYGF 59
Query: 240 TPWSLGKEPASLK 278
P SLGKEPASLK
Sbjct: 60 DPLSLGKEPASLK 72
>pir||S31845 chlorophyll a/b-binding protein I-20 precursor - Chlamydomonas
reinhardtii gi|18125|emb|CAA46235.1| light harvesting
complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 272 bits (695), Expect = 9e-72
Identities = 145/196 (73%), Positives = 150/196 (75%), Gaps = 7/196 (3%)
Frame = +2
Query: 182 PARTPPCWLPDDLPGNYGFDPLVSGQGACFPEAASPRARSSTVAGPCWALPAPWLWSCWA 361
P P WLPDDLPGNYGFDPL G+ A+ R S V WA+ L +
Sbjct: 37 PGSDAPAWLPDDLPGNYGFDPLSLGK----EPASLKRFTESEVIHGRWAM----LGVAGS 88
Query: 362 TATGTM-------PPCGPVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 520
A + P VNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV
Sbjct: 89 LAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 148
Query: 521 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 700
YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN
Sbjct: 149 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 208
Query: 701 PWGANFATNGISVPFF 748
PWGANFATNGISVPFF
Sbjct: 209 PWGANFATNGISVPFF 224
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/69 (56%), Positives = 40/69 (57%)
Frame = +3
Query: 72 MRTLSARTAAPRGFSGRRVAAVSNGQPRDHEGRQLAARLGRPRAGCPMTCRATTASTPWS 251
MRTLSARTAAPRGFSGRRVAAVSNG + P A P P S
Sbjct: 1 MRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAP-AWLPDDLPGNYGFDPLS 59
Query: 252 LGKEPASLK 278
LGKEPASLK
Sbjct: 60 LGKEPASLK 68
>gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI; CAB6A; light-harvesting
complex I protein [Chlamydomonas reinhardtii]
Length = 239
Score = 218 bits (555), Expect = 2e-55
Identities = 121/182 (66%), Positives = 127/182 (69%), Gaps = 7/182 (3%)
Frame = +2
Query: 182 PARTPPCWLPDDLPGNYGFDPLVSGQGACFPEAASPRARSSTVAGPCWALPAPWLWSCWA 361
P P WLPDDLPGNYGFDPL G+ A+ R S V WA+ L +
Sbjct: 41 PGSDAPAWLPDDLPGNYGFDPLSLGK----EPASLKRFTESEVIHGRWAM----LGVAGS 92
Query: 362 TATGTM-------PPCGPVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRGDAGGVV 520
A + P VNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR
Sbjct: 93 LAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQRRRCRRRR 152
Query: 521 YPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLAN 700
PGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGK P+AALGEHLAN
Sbjct: 153 LPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKAPLAALGEHLAN 212
Query: 701 PW 706
PW
Sbjct: 213 PW 214
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/73 (58%), Positives = 44/73 (59%)
Frame = +3
Query: 60 MALSMRTLSARTAAPRGFSGRRVAAVSNGQPRDHEGRQLAARLGRPRAGCPMTCRATTAS 239
MALSMRTLSARTAAPRGFSGRRVAAVSNG + P A P
Sbjct: 1 MALSMRTLSARTAAPRGFSGRRVAAVSNGSRVTMKAGNWLPGSDAP-AWLPDDLPGNYGF 59
Query: 240 TPWSLGKEPASLK 278
P SLGKEPASLK
Sbjct: 60 DPLSLGKEPASLK 72
Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/40 (70%), Positives = 29/40 (72%)
Frame = +3
Query: 663 RAPLLPWASTWPTLGAPTLPPTASPSPSSKCTLPDTSCVD 782
+APL APTLPPTASPSPSSKCTLPDTSCVD
Sbjct: 200 KAPLAALGEHLANPWAPTLPPTASPSPSSKCTLPDTSCVD 239
>pir||PQ0764 chlorophyll a/b-binding protein type Ib, 21K chain precursor -
barley (fragment) gi|544700|gb|AAB29485.1|
light-harvesting complex I; LHC I [Hordeum vulgare]
Length = 221
Score = 109 bits (272), Expect(2) = 5e-36
Identities = 63/109 (57%), Positives = 76/109 (68%), Gaps = 5/109 (4%)
Frame = +2
Query: 404 GKATWFGIEVPF-DLNALLAFEFVAMAAAEGQRG---DAGGVVYPGGAFDPLGFAKDSSK 571
G+AT+ G VP+ +L +LA EF+A+A AE QR D YPGGAFDPLGF+KD +K
Sbjct: 100 GQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAK 159
Query: 572 SGELKLKEIKNGRLAMVAFLGF-VAQHAATGKGPIAALGEHLANPWGAN 715
ELKLKEIKNGRLAM+AF+GF V Q A G GP+ L HLA+PW N
Sbjct: 160 FEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 208
Score = 65.5 bits (158), Expect(2) = 5e-36
Identities = 44/87 (50%), Positives = 49/87 (55%), Gaps = 3/87 (3%)
Frame = +1
Query: 142 TGSRVTMKAGNWLPGSDAPV-LAAR*PAGQLRLRPPGLWARSLLP*S--RFTESEVIHGR 312
T RVTM A W PG P LA P G LR+RP GL + +P + RF ESE+ H R
Sbjct: 14 TSGRVTMSA-EWFPGQPRPAHLAGSSPRG-LRVRPLGL---ATVPENFERFKESEIYHCR 68
Query: 313 WAMLGVAGSLAVELLGYGNWYDAPLWA 393
WAML V G L E LG GNW A WA
Sbjct: 69 WAMLCVPGVLVPEALGLGNWVKAQEWA 95
