Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000402A_C01 KCC000402A_c01
(1079 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ64641.1| NADH:ubiquinone oxidoreductase 20,9 kD-like subun... 259 6e-68
gb|AAM62828.1| unknown [Arabidopsis thaliana] 47 4e-04
ref|NP_032290.1| homeobox protein A13; hypodactyly [Mus musculus... 47 7e-04
ref|NP_567500.1| expressed protein [Arabidopsis thaliana] gi|748... 47 7e-04
sp|P31271|HXAD_HUMAN Homeobox protein Hox-A13 (Hox-1J) gi|183235... 46 0.001
>gb|AAQ64641.1| NADH:ubiquinone oxidoreductase 20,9 kD-like subunit [Chlamydomonas
reinhardtii]
Length = 121
Score = 259 bits (662), Expect = 6e-68
Identities = 121/121 (100%), Positives = 121/121 (100%)
Frame = +3
Query: 84 MTWPEPPNYYEAPKHGFKVTLENPTFPIINPDPNITDAVTNMRSENWGVVAGLAGLGYVA 263
MTWPEPPNYYEAPKHGFKVTLENPTFPIINPDPNITDAVTNMRSENWGVVAGLAGLGYVA
Sbjct: 1 MTWPEPPNYYEAPKHGFKVTLENPTFPIINPDPNITDAVTNMRSENWGVVAGLAGLGYVA 60
Query: 264 GYYFGAKVHWAKPTALFTSIFLGKSGLLWGMSDSAHRLMGFKENSKEVAANLPHVMQRES 443
GYYFGAKVHWAKPTALFTSIFLGKSGLLWGMSDSAHRLMGFKENSKEVAANLPHVMQRES
Sbjct: 61 GYYFGAKVHWAKPTALFTSIFLGKSGLLWGMSDSAHRLMGFKENSKEVAANLPHVMQRES 120
Query: 444 Y 446
Y
Sbjct: 121 Y 121
>gb|AAM62828.1| unknown [Arabidopsis thaliana]
Length = 106
Score = 47.4 bits (111), Expect = 4e-04
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +3
Query: 144 LENPTFPIINPDPNITDAVTNMRSENWGVVAGLAGLGYVAGYYFGAKVHWAKPTALFTSI 323
LE P +P+++ +P T V N + ++ + + G+ GY G K P+ + +
Sbjct: 8 LEKPQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGPSMVTGGL 67
Query: 324 FLGKSGLLWGMSDSAHRLMGFKENSKEVAA 413
G ++ +SA RLMGF N EVA+
Sbjct: 68 IGLMGGFMYAYQNSAGRLMGFFPNDGEVAS 97
>ref|NP_032290.1| homeobox protein A13; hypodactyly [Mus musculus]
gi|4033408|sp|Q62424|HXAD_MOUSE Homeobox protein Hox-A13
(Hox-1.10) gi|1399859|gb|AAB03322.1| transcription
factor HOXA13
Length = 386
Score = 46.6 bits (109), Expect = 7e-04
Identities = 41/119 (34%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = -2
Query: 748 PLLVPVSGNTHPGAASSSAAAATRQLLACQQHRFQCLGRIYSPCILAPAAAAA---APPR 578
P GN AA+++AAAA QC + P LAP AAAA AP
Sbjct: 61 PAAAAAGGNFSVAAAAAAAAAAAAN---------QCRNLMAHPAPLAPGAAAAYSSAPGE 111
Query: 577 SPPPCYIHQSSAPTTAATAAAAAAASPRAIGGAAACSGCVQSV**DSRCITCGRLAATS 401
+PP ++A AA AAAAAAAS G A +G + +C C A +S
Sbjct: 112 APPSA---AAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAA----KQCSPCSAAAQSS 163
>ref|NP_567500.1| expressed protein [Arabidopsis thaliana] gi|7485078|pir||C71431
hypothetical protein - Arabidopsis thaliana
gi|2245001|emb|CAB10421.1| hypothetical protein
[Arabidopsis thaliana] gi|7268395|emb|CAB78687.1|
hypothetical protein [Arabidopsis thaliana]
Length = 106
Score = 46.6 bits (109), Expect = 7e-04
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +3
Query: 144 LENPTFPIINPDPNITDAVTNMRSENWGVVAGLAGLGYVAGYYFGAKVHWAKPTALFTSI 323
LE +P+++ +P T V N R+ ++ + + G+ GY G K P+ + +
Sbjct: 8 LEKAQYPVVDRNPAFTKVVGNFRTLDYLRFSTITGISVTVGYLSGIKPGIKGPSMVTGGL 67
Query: 324 FLGKSGLLWGMSDSAHRLMGFKENSKEVAA 413
G ++ +SA RLMGF N EVA+
Sbjct: 68 IGLMGGFMYAYQNSAGRLMGFFPNDGEVAS 97
>sp|P31271|HXAD_HUMAN Homeobox protein Hox-A13 (Hox-1J) gi|1832353|gb|AAC50993.1|
transcription factor HOXA13 [Homo sapiens]
Length = 388
Score = 45.8 bits (107), Expect = 0.001
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Frame = -2
Query: 748 PLLVPVSGNTHPGAASSSAAAATRQLLACQQHRFQCLGRIYSPCILAPAAAAA---APPR 578
P GN AA+++AAAA QC + P LAP AA+A AP
Sbjct: 61 PAAAAAGGNFSVAAAAAAAAAAAAN---------QCRNLMAHPAPLAPGAASAYSSAPGE 111
Query: 577 SPPPCYIHQSSAPTTAATAAAAAA------ASPRAIGGAAACSGC 461
+PP ++A AA AAAA++ A P A A CS C
Sbjct: 112 APPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPC 156
