KCC000395A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000395A_C01 KCC000395A_c01
CCCCGGCGCCGGGAGCCGCCAGGGTGCGGnGAGATGGACTGACGGTTGCCCATGTGCGGT
GCACGCGTGCAGACnGGGAGnGTGGTTGGTCTTTCCTAGAGATGTGGAGGACAAAGTGGC
GTGGCGCCAGACGCACATTTGAAGATGGCTAGGTGTTGGTGCAACCCTGCAAAGGATGTG
CGTCCATGGGACTAGCCCAGGTACGAATGTCCTACGCGCATTTCACTGTAGGCTTTGCGA
CTGTTTGTTAGCAGCGCAGTAGTCCCAAAAGTGCCGAAGGTGAAGCCGAACCGCGAAGAA
GGAAAAGTCCCGGCGCAAATTGCGCTTGAGTTCTTTGGGGGTGATGTTAAAAGATGCTGC
TATAAGACCCGGTTTGATGCGTGTGACGAGATTCAAGCAGTGATTTGAAGGCCCATGCTG
CAGCCGCGCACGGGCCCGAAGGGACTGGCGGGGTCCTGTAACATGATGCACAACTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGGAAGGGGGCTTACTTCGGCGCAAGAGGTACACTA
AACCAAGTGATTTACGCGCTCAGCTATCTCAATTTGTCCCCTGGACCCCGAACTCGCACA
AAGACGCCATGGCCCCGAAGTTTAACGACGACGTTCTGCTTCAGATCAGCTCGGTCGGCA
CCTGCGCCTGGGGCGTTGTCGGCTTAGCTGGCCTGGAACAGACCCACAAGGCCTTTTTCA
CGGACAAGCGGGAGAACAACCCTGAGATGTCGCGCTACTGGGGAGACGCGTGCGCGATGG
CTGGCGCGAGTGGCTTCCTCGTTGCGCGCTCGGACGACAAGCAGCTGAAGAAGGACACAA
TGAAGGTGCACGGTGCGGCCTGGGTTGCCTGCGGTGCCCTCAGCGCCTACAACTCCTACA
AGGGCACGCAGCGCAAGGAGATCGGCTACTCCAACGGCGCCGTCAGCGCGGCCCTAGGCG
GTCTGCTCCTGGCGCGCGGCTTCTGGAAGGACGACAAGGACAAGAAGAAGGCCGACAAGA
AGGGCACCACCACCACCACCACCACTACCGCTACCACCAAGAAGTAGTGAGCGCCGGCTG
GAGATTGGTTCTGCCGCCGAGCGGCCGAGGCGTGTGTTTCAAATGCTATCCTTGCTCTAG
CTCATTCCTTGAAGCTGAACCTTTTGTACTTTTGAGCTACGCATGCTTTCTTTGGCAGTT
GGGCTCGTTGATAATACGGTACATACAGTGCCCGCCTCTTCCCCGTCCACCCAAACACTT
TGCATGGTTTGTGGGCACCTTAAATCGTAAGTTTTCGTGATATCACACGCATTGGGCGCA
TGAATGTGCACAATGCCCCACATACGGTAGGCGTAGAATGTCTTTCTACATTGGATATTG
GCACGCCGTACTGCACATACACAGACCTCATGCGTTTTGGCGTCAATAACGTGCATGGCT
GGCTTCGTGTAAGACCCAATCGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000395A_C01 KCC000395A_c01
         (1465 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00057802.1| COG0079: Histidinol-phosphate/aromatic aminot...    55  4e-06
ref|XP_290770.2| KIAA1447 protein [Homo sapiens]                       54  5e-06
gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays]            51  6e-05
dbj|BAC10230.1| hypothetical protein [Oryza sativa (japonica cul...    50  8e-05
ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|2838049...    50  1e-04

>ref|ZP_00057802.1| COG0079: Histidinol-phosphate/aromatic aminotransferase and cobyric
            acid decarboxylase [Thermobifida fusca]
          Length = 601

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 47/137 (34%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
 Frame = -2

Query: 1011 PSSCPCRP--SRSRAPGADRLGPR*RRRWSSRSPCAACPCRSCRR*GHRRQPRPHRAPSL 838
            P + P RP  SR+RAPG+ R  P        R P   CP R       R +PRP R   L
Sbjct: 71   PVNRPRRPRGSRTRAPGSRRQAPGTHHPGPGRPPVRHCPRR-------RHRPRPGRRQRL 123

Query: 837  CPSS---------AACRPSAQRGS--HSRQPSRTRLPSSATSQGCSPACP*KRP----CG 703
            CP +           CRP  QRGS  H R  S     +    +G  P  P +R      G
Sbjct: 124  CPRTPGGHDRRRPVRCRPRPQRGSDLHRRPLSGV---AGRLLRGFQPRAPHRRGGRPLLG 180

Query: 702  SVPGQLSRQRPRRRCRP 652
            +   +L  + PRRR RP
Sbjct: 181  TERAELPARHPRRRIRP 197

>ref|XP_290770.2| KIAA1447 protein [Homo sapiens]
          Length = 174

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 42/131 (32%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
 Frame = -2

Query: 1038 WWWWCPSCRPSSCPCRPSRSRAPGADRLGPR*RRRWSSRSPCAACPCRSCRR*GHRRQPR 859
            W W C S R       P+ + A    R   R  R W    P A+ P   C      R P 
Sbjct: 22   WGWRCASTRARQSSRCPTTATATAPSRTRTRTGRGWRPACPPASSPACPCPLPPLARPPP 81

Query: 858  PHRAPSLCPSSAACRPSAQRGSHSRQPSRTRL----PSSATSQGCSPACP*KRPCGSVPG 691
            P +AP   P+SA   P   R   + Q +RTRL    P+S T   C P+ P  RPC     
Sbjct: 82   PPQAPCPPPASA---PPTTRTRPTAQTTRTRLCCCRPASPTP--CPPSWPSPRPCAPRAA 136

Query: 690  QLSRQRPRRRC 658
             L+R      C
Sbjct: 137  ALTRMPSAASC 147

>gb|AAF43497.1|AF134579_1 arabinogalactan protein [Zea mays]
          Length = 274

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 50/156 (32%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
 Frame = -2

Query: 1014 RPSSCPCRPSRSR-APGADRLGPR*RRRWSSRSPCAACPCRSCRR*GHRRQPRPHRAPSL 838
            RPS C    + S  APG    G      WSS  P  A PC SCR    R +P P R    
Sbjct: 58   RPSPCSSTATSSTSAPGRRPRGTTTSTAWSS--PWTASPCASCREPTPRGRPAPCRR--- 112

Query: 837  CPSSAACRPSA--QRGSHSRQPSRTRLPSSATSQGCSPACP*KRPCGSV-----PGQLSR 679
            CPS A  RP+A   R +       T  PS   S GC+      RP  +      P   +R
Sbjct: 113  CPSPAPARPTACSSRSTAGSPSGPTPCPSQRRSPGCTGTA--SRPTTASRTLTWPSSSAR 170

Query: 678  QRP------RRRCRPS*SEAERRR*TSGPWRLCASS 589
              P       RR  P+ S     R    PW   A++
Sbjct: 171  SPPTCTAWSARRTAPTTSTGSMSRPQCPPWEGTATT 206

>dbj|BAC10230.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 160

 Score = 50.4 bits (119), Expect = 8e-05
 Identities = 47/122 (38%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
 Frame = +1

Query: 730  GRTTLRCRATGETRARWLARVASSLRARTTSS*RRTQ*RCTVRPGLPAVPSA-------- 885
            G+   R R  G   AR L RVA    A  +S+  R + R   R   P V SA        
Sbjct: 51   GKARRRRRRQGGGEARRL-RVARDTTAAASSAAPRRRARLLRRNPPPLVSSATSHRRSSH 109

Query: 886  PTTPTRARSARRSATPTAPSARP*AVCSWRAASGRTTRTRRRPTRRAPPPPPPLP---LP 1056
            P  P  AR  RR   P A SA P A              RR   RR+PPPPPPLP   LP
Sbjct: 110  PPHPAAARLLRRMPPPLASSAAPAAA-------------RRLIPRRSPPPPPPLPVARLP 156

Query: 1057 PR 1062
            PR
Sbjct: 157  PR 158

>ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|28380492|gb|AAF49349.4|
            CG13731-PA [Drosophila melanogaster]
          Length = 926

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 53/169 (31%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
 Frame = +1

Query: 580  PGPRTRTKTPWPRSLTTTFCFRSARSAPAPGALSA*LAWNRPTRPFSRTSGRTTLRCRAT 759
            P P TR  T  P +       R+ R+ P P           PTRP   T   TT R    
Sbjct: 428  PPPPTRPPTKPPTTYLPPVTVRTTRATPPPT--------RPPTRP--PTYPPTTRRLTTP 477

Query: 760  GETRARWLARVASSLRARTTSS*RRTQ*RCTVRPGLPAV--PSAPTT----PTRARSARR 921
              T      +    +  RTT        R T RP LP    P+ P T    P   R+ R 
Sbjct: 478  APTYLPPTNKPLPPVTVRTTV-------RTTPRPTLPPTKPPTRPPTTYLPPPTVRTTRP 530

Query: 922  SATPTAPSARP*AVCSWRAASGRTTRTRRRPTR---RAPPPPPPLPLPP 1059
               PT P  +P         + RTTR    PTR   R P PPP  P PP
Sbjct: 531  PPPPTRPPTKP-PTTYLPPVTVRTTRATPPPTRPPTRPPTPPPTRPPPP 578

 Score = 43.1 bits (100), Expect = 0.013
 Identities = 52/173 (30%), Positives = 60/173 (34%), Gaps = 18/173 (10%)
 Frame = +1

Query: 580  PGPRTRTKTPWPRSLTTTFCFRSARSAPAPGALSA*LAWNRPTRPFSRTSGRTTLRCRAT 759
            P P TR  T  P +       R+ R+ P P           PTRP   T   TT R    
Sbjct: 742  PPPPTRPPTKPPTTYLPPVTVRTTRATPPPT--------RPPTRP--PTYPPTTRRLTTP 791

Query: 760  GETRARWLARVASSLRARTTSS*RRTQ*RCTVRPGLPAV--PSAPTT----PTRARSARR 921
              T      +    +  RTT        R T RP LP    P+ P T    P   R+ R 
Sbjct: 792  APTYLPPTNKPLPPVTVRTTV-------RTTPRPTLPPTRPPTKPPTTYLPPPTVRTTRP 844

Query: 922  SATPTAPSARP*AVCSWRAASGRTTRTRRRPTRR----APPP--------PPP 1044
               PT P  +P           RTTR    PTRR     PPP        PPP
Sbjct: 845  PPPPTRPPTKPPTTYLPPVTVVRTTRPPPPPTRRTTVYVPPPTVRTTVYVPPP 897

 Score = 42.7 bits (99), Expect = 0.016
 Identities = 53/173 (30%), Positives = 63/173 (35%), Gaps = 6/173 (3%)
 Frame = +1

Query: 580  PGPRTRTKTPWPRSLTTTFCFRSARSAPAPGALSA*LAWNRPTRPFSRTSGRTTLRCRAT 759
            P P TR  T  P +       R+ R+ P P           PTRP   T   TT R    
Sbjct: 639  PPPPTRPPTKPPTTYLPPVTVRTTRATPPPT--------RPPTRP--PTYPPTTRRLTTP 688

Query: 760  GETRARWLARVASSLRARTTSS*RRTQ*RCTVRPGLPAV--PSAPTT----PTRARSARR 921
              T      +    +  RTT        R T RP LP    P+ P T    P   R+ R 
Sbjct: 689  APTYLPPTNKPLPPVTVRTTV-------RTTPRPTLPPTKPPTRPPTTYLPPPTVRTTRP 741

Query: 922  SATPTAPSARP*AVCSWRAASGRTTRTRRRPTRRAPPPPPPLPLPPRSSERRL 1080
               PT P  +P         + RTTR    PTR   PP  P   PP  + RRL
Sbjct: 742  PPPPTRPPTKP-PTTYLPPVTVRTTRATPPPTR---PPTRPPTYPP--TTRRL 788

 Score = 40.4 bits (93), Expect = 0.081
 Identities = 51/173 (29%), Positives = 61/173 (34%), Gaps = 6/173 (3%)
 Frame = +1

Query: 580  PGPRTRTKTPWPRSLTTTFCFRSARSAPAPGALSA*LAWNRPTRPFSRTSGRTTLRCRAT 759
            P P TR  T  P +       R+ R+ P P           PTRP +    R        
Sbjct: 531  PPPPTRPPTKPPTTYLPPVTVRTTRATPPPT--------RPPTRPPTPPPTRPPPPPTRA 582

Query: 760  GETRARWLARVASSLRARTTSS*RRTQ*RCTVRPGLPAV--PSAPTT----PTRARSARR 921
                  +L      L   T     RT  R T RP LP    P+ P T    P   R+ R 
Sbjct: 583  STPAPTYLPPTNKPLPPVTV----RTTVRTTPRPTLPPTKPPTRPPTTYLPPPSVRTTRP 638

Query: 922  SATPTAPSARP*AVCSWRAASGRTTRTRRRPTRRAPPPPPPLPLPPRSSERRL 1080
               PT P  +P         + RTTR    PTR   PP  P   PP  + RRL
Sbjct: 639  PPPPTRPPTKP-PTTYLPPVTVRTTRATPPPTR---PPTRPPTYPP--TTRRL 685

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 23/72 (31%), Positives = 30/72 (40%), Gaps = 5/72 (6%)
 Frame = +1

Query: 859  PGLPAVPSAPTTPTRARSARRSATPTAPSARP*AVCSWRAASGRTTRTRRRPTRRAPP-- 1032
            P  P  P     PT+  + R  AT   P+ +P    + R  +   TR    PTR + P  
Sbjct: 317  PPPPRTPPPTRPPTKPPTTRPPATYLPPTNKPPPPVTTRRPTPPPTRPPPPPTRASTPAP 376

Query: 1033 ---PPPPLPLPP 1059
               PP   PLPP
Sbjct: 377  TYLPPTNKPLPP 388

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 22/65 (33%), Positives = 24/65 (36%)
 Frame = +1

Query: 865  LPAVPSAPTTPTRARSARRSATPTAPSARP*AVCSWRAASGRTTRTRRRPTRRAPPPPPP 1044
            LP  P +P TP           PT P  RP            T +     T R PPPPPP
Sbjct: 270  LPPPPPSPRTPP----------PTRPPTRPPTTRPPATYLPPTNKPLPPVTTRLPPPPPP 319

Query: 1045 LPLPP 1059
               PP
Sbjct: 320  PRTPP 324



EST assemble image


clone accession position
1 CM075c02_r AV391646 1 592
2 CM011e11_r AV386946 224 757
3 LC060d07_r AV623207 298 629
4 LC081c05_r AV624689 520 1037
5 MX220g07_r BP090229 528 934
6 HCL054b10_r AV642580 571 1181
7 MXL064c10_r BP096755 625 981
8 MX050g07_r BP088069 626 970
9 CL45b08_r AV397791 626 1099
10 MX056c11_r BP088284 626 965
11 CM042a10_r AV389228 628 855
12 CM099c10_r AV393141 628 1110
13 LC022e04_r AV620464 629 1057
14 LCL052a02_r AV629098 629 1039
15 CM008h10_r AV386743 629 1149
16 HC098e02_r AV639368 631 1043
17 MX016c05_r BP086766 631 1039
18 HC089g10_r AV638712 631 1021
19 MX001a06_r BP086056 631 1035
20 HC039a12_r AV634872 631 1102
21 CM075c10_r AV391602 631 1266
22 CM099b03_r AV393151 632 1137
23 LC021a06_r AV620358 632 1137
24 CM057a03_r AV390431 635 1160
25 HC025e04_r AV633805 635 1113
26 HC029a07_r AV634082 635 1125
27 CM084c03_r AV392601 635 1029
28 CM063g05_r AV390069 637 1235
29 CM032e12_r AV388471 637 1103
30 CL25a07_r AV394533 643 1142
31 CM007b09_r AV386827 646 1153
32 CM095g11_r AV392723 659 1180
33 CM070a04_r AV391254 1013 1646
34 CL80d09_r AV397308 1040 1488
35 CL61c10_r AV396339 1044 1566
36 CL64f07_r AV396645 1206 1594




Chlamydomonas reinhardtii
Kazusa DNA Research Institute