Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000383A_C04 KCC000383A_c04
(1874 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_454619.1| conserved hypothetical protein [Salmonella ente... 44 1e-09
ref|NP_285702.1| orf, hypothetical protein [Escherichia coli O15... 44 1e-09
dbj|BAB96588.1| hgtA 5'-region hypothetical protein 1 [Escherich... 44 2e-09
ref|NP_751971.1| Hypothetical protein yaaH [Escherichia coli CFT... 44 2e-09
ref|NP_404109.1| putative membrane protein [Yersinia pestis] gi|... 56 3e-06
>ref|NP_454619.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi] gi|16763399|ref|NP_459014.1| putative
regulator [Salmonella typhimurium LT2]
gi|29140552|ref|NP_803894.1| conserved hypothetical
protein [Salmonella enterica subsp. enterica serovar
Typhi Ty2] gi|25331233|pir||AB0503 conserved
hypothetical protein STY0009 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16418502|gb|AAL18973.1| putative regulatory protein
[Salmonella typhimurium LT2] gi|16501292|emb|CAD01162.1|
conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29136176|gb|AAO67743.1| conserved hypothetical
protein [Salmonella enterica subsp. enterica serovar
Typhi Ty2]
Length = 188
Score = 44.3 bits (103), Expect(3) = 1e-09
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 502 WCGLWAVLTFGFFIVTCRKNGCLMTIFSTLVITFALLSGG--VWDPRCEQAAGYFGFFCG 675
+ GLW V T F T + L +F +L + FALL+ G + AG+ G CG
Sbjct: 102 YLGLWGVFTLFMFFGTLKAARALQFVFLSLTVLFALLAVGNITGNEATIHIAGWVGLVCG 161
Query: 676 SSAIYAA 696
+SAIY A
Sbjct: 162 ASAIYLA 168
Score = 37.0 bits (84), Expect(3) = 1e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 305 VFCYAMFYGGLGQFVAGVLELIKGNTFG 388
+ +FYGG+ Q AG+LE KGNTFG
Sbjct: 38 ILAMGIFYGGIAQIFAGLLEYKKGNTFG 65
Score = 25.0 bits (53), Expect(3) = 1e-09
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 396 AFASYGAFWMGLV 434
AF SYG+FW+ LV
Sbjct: 68 AFTSYGSFWLTLV 80
>ref|NP_285702.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
gi|15829264|ref|NP_308037.1| hypothetical protein
[Escherichia coli O157:H7] gi|16128004|ref|NP_414551.1|
hypothetical protein [Escherichia coli K12]
gi|24111460|ref|NP_705970.1| orf, conserved hypothetical
protein [Shigella flexneri 2a str. 301]
gi|30061580|ref|NP_835751.1| hypothetical protein
[Shigella flexneri 2a str. 2457T]
gi|140161|sp|P28695|YAAH_ECOLI Hypothetical protein yaaH
gi|1073400|pir||E56688 protein yaaH - Escherichia coli
(strain K-12) gi|25331229|pir||B90630 yaaH protein
[similarity] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952) gi|25331230|pir||B85481 yaaH
protein [similarity] - Escherichia coli (strain O157:H7,
substrain EDL933) gi|41756|emb|CAA47931.1| unnamed
protein product [Escherichia coli]
gi|1786191|gb|AAC73121.1| orf, hypothetical protein
[Escherichia coli K12]
gi|12512685|gb|AAG54310.1|AE005177_10 orf, hypothetical
protein [Escherichia coli O157:H7 EDL933]
gi|13359466|dbj|BAB33433.1| hypothetical protein
[Escherichia coli O157:H7]
gi|24050208|gb|AAN41677.1|AE015038_10 orf, conserved
hypothetical protein [Shigella flexneri 2a str. 301]
gi|30039822|gb|AAP15556.1| hypothetical protein S0010
[Shigella flexneri 2a str. 2457T]
Length = 188
Score = 43.9 bits (102), Expect(3) = 1e-09
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 499 LWCGLWAVLTFGFFIVTCRKNGCLMTIFSTLVITFALLSGG--VWDPRCEQAAGYFGFFC 672
++ GLW V T F T + L +F +L + FALL+ G + AG+ G C
Sbjct: 101 VYLGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC 160
Query: 673 GSSAIYAA 696
G+SAIY A
Sbjct: 161 GASAIYLA 168
Score = 37.0 bits (84), Expect(3) = 1e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 305 VFCYAMFYGGLGQFVAGVLELIKGNTFG 388
+ +FYGG+ Q AG+LE KGNTFG
Sbjct: 38 ILAMGIFYGGIAQIFAGLLEYKKGNTFG 65
Score = 25.0 bits (53), Expect(3) = 1e-09
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 396 AFASYGAFWMGLV 434
AF SYG+FW+ LV
Sbjct: 68 AFTSYGSFWLTLV 80
>dbj|BAB96588.1| hgtA 5'-region hypothetical protein 1 [Escherichia coli]
Length = 188
Score = 43.5 bits (101), Expect(3) = 2e-09
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 499 LWCGLWAVLTFGFFIVTCRKNGCLMTIFSTLVITFALLSGG--VWDPRCEQAAGYFGFFC 672
++ GLW V T F T + L +F +L + FALL+ G + AG+ G C
Sbjct: 101 VYLGLWGVFTVFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC 160
Query: 673 GSSAIYAA 696
G+SAIY A
Sbjct: 161 GASAIYLA 168
Score = 37.0 bits (84), Expect(3) = 2e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 305 VFCYAMFYGGLGQFVAGVLELIKGNTFG 388
+ +FYGG+ Q AG+LE KGNTFG
Sbjct: 38 ILAMGIFYGGIAQIFAGLLEYKKGNTFG 65
Score = 25.0 bits (53), Expect(3) = 2e-09
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 396 AFASYGAFWMGLV 434
AF SYG+FW+ LV
Sbjct: 68 AFTSYGSFWLTLV 80
>ref|NP_751971.1| Hypothetical protein yaaH [Escherichia coli CFT073]
gi|26106329|gb|AAN78515.1|AE016755_15 Hypothetical
protein yaaH [Escherichia coli CFT073]
Length = 188
Score = 43.5 bits (101), Expect(3) = 2e-09
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 499 LWCGLWAVLTFGFFIVTCRKNGCLMTIFSTLVITFALLSGG--VWDPRCEQAAGYFGFFC 672
++ GLW + T F T + L +F +L + FALL+ G + AG+ G C
Sbjct: 101 VYLGLWGIFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC 160
Query: 673 GSSAIYAA 696
G+SAIY A
Sbjct: 161 GASAIYLA 168
Score = 37.0 bits (84), Expect(3) = 2e-09
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 305 VFCYAMFYGGLGQFVAGVLELIKGNTFG 388
+ +FYGG+ Q AG+LE KGNTFG
Sbjct: 38 ILAMGIFYGGIAQIFAGLLEYKKGNTFG 65
Score = 25.0 bits (53), Expect(3) = 2e-09
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 396 AFASYGAFWMGLV 434
AF SYG+FW+ LV
Sbjct: 68 AFTSYGSFWLTLV 80
>ref|NP_404109.1| putative membrane protein [Yersinia pestis]
gi|22127581|ref|NP_671004.1| hypothetical protein
[Yersinia pestis KIM] gi|25331232|pir||AH0057 probable
membrane protein YPO0467 [imported] - Yersinia pestis
(strain CO92) gi|15978559|emb|CAC89323.1| putative
membrane protein [Yersinia pestis CO92]
gi|21960688|gb|AAM87255.1|AE013974_3 hypothetical
protein [Yersinia pestis KIM]
Length = 203
Score = 55.8 bits (133), Expect = 3e-06
Identities = 52/179 (29%), Positives = 77/179 (42%), Gaps = 6/179 (3%)
Frame = +1
Query: 208 DPGPFGLLCFGMTTCMLMFITTEWTTTGLPAHSLLLRDVLRWPGPVRRRRSRADQGQHLW 387
+PGP GL+ FGMTT +L + P S++L + + G + +
Sbjct: 8 NPGPLGLMGFGMTTVLLNLHNAGF----FPLSSVILSMGIFYGGLAQILAGLLEYK---- 59
Query: 388 RQLPLPPTAPSGWG--WFLLEYLTWTNKALYAGVQSGKSL--WCGLWAVLTFGFFIVTCR 555
+ TA + +G W L L K A + L + GLW + T FI T
Sbjct: 60 KGNTFAATAFTSYGAFWLSLVGLLMLPKMGLADATDAQFLGVYLGLWGIFTLFMFIGTLP 119
Query: 556 KNGCLMTIFSTLVITFALLSGGVW--DPRCEQAAGYFGFFCGSSAIYAAFVFLYKIELG 726
N L +F +L I FALL+ G + + AG+ G CG+SAIY A + + G
Sbjct: 120 ANRALQFVFGSLTILFALLAVGNFTDNHTLLMFAGFEGIICGASAIYLAMAEVLNEQYG 178
Score = 38.1 bits (87), Expect(2) = 3e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 290 GFLP---TVFCYAMFYGGLGQFVAGVLELIKGNTFGGS 394
GF P + +FYGGL Q +AG+LE KGNTF +
Sbjct: 30 GFFPLSSVILSMGIFYGGLAQILAGLLEYKKGNTFAAT 67
Score = 30.4 bits (67), Expect(2) = 3e-04
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 372 RATPLAAAAFASYGAFWMGLV 434
+ AA AF SYGAFW+ LV
Sbjct: 60 KGNTFAATAFTSYGAFWLSLV 80
