KCC000381A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000381A_C01 KCC000381A_c01
cgcccggtttccatacgctgtgtaccagcttggtggcgtttacataagtgctattattca
agtttagctttgcctcggaaTTATGCTGTGAATTTGCCAAGACTCCATCGAGCCTGTGGT
ATACGGATGCACCACTGTCTGATGAAGTCTGTCATAGTTTCATCAGCACAATCGGCGGCG
GGCGCCAGCCTCGCGGCGCCCTCGGCCGGGCACATTGCAGCACAACGCTCAGTCCCGCCC
GCTCACACCAGGCCCGCTTCCGCTCTGAACTGCGCTTCGGCATCCATAGTTTGTGCTATC
GACTGTTGCGGGCCCACAAATCGTGGCTGCCATGGCAAACGGTTTTCAGCCCTTCGGCAC
AATCGTGGCCTAACCACAGCAGCTCGCTCGCGGCCGCACGTGTGCACCCACGCCGCGCCG
GAGCCAGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000381A_C01 KCC000381A_c01
         (429 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_031993.1| even skipped homeotic gene 2 homolog [Mus muscu...    36  0.11
ref|NP_870392.1| probable osmotically inducible protein Y [Pirel...    34  0.53
sp|Q03828|EVX2_HUMAN Homeobox even-skipped homolog protein 2 (EV...    33  0.91
ref|XP_292795.1| similar to Zinc finger protein 208 [Homo sapiens]     33  0.91
ref|ZP_00066484.1| COG1012: NAD-dependent aldehyde dehydrogenase...    33  0.91

>ref|NP_031993.1| even skipped homeotic gene 2 homolog [Mus musculus]
           gi|1706722|sp|P49749|EVX2_MOUSE Homeobox even-skipped
           homolog protein 2 (EVX-2) gi|284770|pir||A43915 homeotic
           protein even-skipped homolog Evx-2 - mouse
           gi|193207|gb|AAA37585.1| homeobox protein
           gi|249138|gb|AAB22138.1| mesodermal cell dorsoventral
           fates determinator [Mus sp.]
          Length = 475

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +1

Query: 157 VSSAQSAAGASLAAPSAGHIAAQRSVPPA-HTRPASALNCASASIVCAIDCCGPTNRGCH 333
           ++SA SAA A+ AA +A   AA    PP+  + P S L+C S+    A         G  
Sbjct: 356 LNSAASAAAAAAAAAAAASSAAAAGAPPSGSSAPCSCLSCHSSQSAAAAAAAAAAALGSR 415

Query: 334 GKRFSALRHNRGLTTAARSRPHVCTHAAP 420
           G   S      G  TA  S    C+ AAP
Sbjct: 416 GGGGSGGGGGGGAGTAGGS-DFGCSAAAP 443

>ref|NP_870392.1| probable osmotically inducible protein Y [Pirellula sp.]
           gi|32447949|emb|CAD77469.1| probable osmotically
           inducible protein Y [Pirellula sp.]
          Length = 586

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
 Frame = +3

Query: 303 LLRAH-KSWLPWQTVFSPSAQSWPNHSSSLAAARVHPRRAGAR 428
           +LR H  +WL WQT    + ++  +H  ++   R HP  +G R
Sbjct: 539 ILRGHVDTWLQWQTAMDLTVEAGAHHPHNMIRVRYHPPHSGMR 581

>sp|Q03828|EVX2_HUMAN Homeobox even-skipped homolog protein 2 (EVX-2)
          Length = 476

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 157 VSSAQSAAGASLAAPSAGHIAAQRSVPPA-HTRPASALNCASASIVCAIDCCGPTNRGCH 333
           ++SA SAA A+ AA +A   AA    PP+  + P S L+C S+    A         G  
Sbjct: 353 LNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSR 412

Query: 334 G 336
           G
Sbjct: 413 G 413

>ref|XP_292795.1| similar to Zinc finger protein 208 [Homo sapiens]
          Length = 754

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 26/81 (32%), Positives = 34/81 (41%)
 Frame = +1

Query: 163 SAQSAAGASLAAPSAGHIAAQRSVPPAHTRPASALNCASASIVCAIDCCGPTNRGCHGKR 342
           +A +   A+  AP  G  AA    PP    P      + AS+     CCG   RG  G+R
Sbjct: 253 AAHAPPAAAAEAPKDG--AASAPQPPPTFPPGPGAGGSGASVPGKTFCCGICGRG-FGRR 309

Query: 343 FSALRHNRGLTTAARSRPHVC 405
            +  RH R  T     +PH C
Sbjct: 310 ETLKRHERIHT---GEKPHQC 327

>ref|ZP_00066484.1| COG1012: NAD-dependent aldehyde dehydrogenases [Microbulbifer
           degradans 2-40]
          Length = 461

 Score = 33.1 bits (74), Expect = 0.91
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = +1

Query: 22  VPAWWRLHKCYYSSLALPRNYAVNLPRLHRACGIRMHHCLMKSVIVSSAQSAAGASLAAP 201
           VPA        ++S  LP+N   NLP      G  + H  +K+V  + + SAAG  +AA 
Sbjct: 158 VPATAAALTAAFNSAGLPKNVMTNLPIETELVGEAIDHPAVKAVSFTGS-SAAGKKVAAR 216

Query: 202 SAGHI 216
           +AG I
Sbjct: 217 AAGGI 221



EST assemble image


clone accession position
1 HCL054h02_r AV642621 1 429
2 CL23h09_r AV394512 98 416




Chlamydomonas reinhardtii
Kazusa DNA Research Institute