KCC000379A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000379A_C01 KCC000379A_c01
taacgacacagggggcgcaaactaCTTGAAGCCTTCTGCACAGTCCTCGTGATTTAGGCT
TCGTTGTTAGGACGGAAGAAGACTTCCGCAGCCGGCGCATTGGGGGCTGAGCAATTGCAT
CAAGCACAAGACTACCATAGCCTCGTCTGGCGTTGTCCGGAAGAGCAAAATGTCGGAGGG
AGGACACCTGCAGCAACGCTCCGGAGGAGGAAAGTCCTTAAGTAAGGGCTCTCCTAGTAG
TTTAATAGGCACGTTGAAGAAGCTGCTCCGGAGCGGCAAGGAGGTCTCGGAGAGCGGCCT
GCGGAGCTCTTTTGGCGTCGACAGTGGTTGCAACACACCAACTTCGCAGCCTCGAGCACC
GTGGGGCACGCAGAGCACCTCACAATCAGAGCTGGAGGCGACTACCGGCCTTGCAGGCAG
CCTGGCACCAGGAAAAGGCGGTCTGGCGAGCCCGACGCTTTCGCCTTTTGGCGGTAGTGG
TATCAAGCGCCTGTTCGAGCCCAAGTTCCGCCAACAGTACCATAGTGGTCCGCTTCCTTC
ATCCATATCGTCGTGTGCGAGCAAGCCCATCAGCATAGCCAACAAGGCACTGGCTCACTC
CATCTCAGACCCTTGTGACAACCCAAGCACGTCGTCCGTCGGGTTTGACTCGTCGGGTTC
CAACGCGGCCTGGGCGATTCCGGCTGCGCCACGGTCCGCGGCATCCATAGTGGTAGGCTC
CCCGCCGCCTGTCCTGCGCGATGGTGCGCGGTTTGAGACACGCTCCGAGGCGGCTCTTCC
GTCGCTGGCAGAGCTCGCAAACCACGCGCGGATGCACACCGCGGACGCCCTACATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000379A_C01 KCC000379A_c01
         (836 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T46707 proteophosphoglycan, membrane-associated [imported] ...    49  1e-04
gb|AAQ82687.1| Epa5p [Candida glabrata]                                48  2e-04
ref|XP_214975.2| similar to Hypothetical zinc finger protein KIA...    44  0.003
ref|XP_133541.4| similar to Hypothetical zinc finger protein KIA...    44  0.003
ref|NP_508292.1| putative protein family member (XC177) [Caenorh...    44  0.003

>pir||T46707 proteophosphoglycan, membrane-associated [imported] - Leishmania
           major (fragment) gi|5420389|emb|CAB46680.1|
           proteophosphoglycan [Leishmania major]
          Length = 383

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 55/234 (23%), Positives = 86/234 (36%), Gaps = 3/234 (1%)
 Frame = +2

Query: 143 SSGVVRKSKMSEGGHLQQRSGGGKSLSKGSPSSLIGTLKKLLRSGKEVSESGLRSSFGVD 322
           SS     S  S        S    + S  +PSS   +      S    S S   S+    
Sbjct: 35  SSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSA---- 90

Query: 323 SGCNTPTSQPRAPWGTQSTSQSELEATTGLAGSLAPGKGGLA---SPTLSPFGGSGIKRL 493
           S  + P+S   AP  + S++ S   +    + S AP     A   S + +P   S     
Sbjct: 91  SSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPS 150

Query: 494 FEPKFRQQYHSGPLPSSISSCASKPISIANKALAHSISDPCDNPSTSSVGFDSSGSNAAW 673
                     S   PS+ SS A    S ++   A S S P  + S  S    S+ S+++ 
Sbjct: 151 ASSSSAPSSSSSSAPSASSSSAPSSSS-SSAPSASSSSAPSSSSSAPSASSSSAPSSSSS 209

Query: 674 AIPAAPRSAASIVVGSPPPVLRDGARFETRSEAALPSLAELANHARMHTADALH 835
           + P+A  S+A     S P         +   +  LPS +  ++HA  +  D L+
Sbjct: 210 SAPSASSSSAPSSSSSAPSSSSTTTTMDPTPDPVLPSSSSSSSHADTYFYDRLY 263

>gb|AAQ82687.1| Epa5p [Candida glabrata]
          Length = 1218

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 51/213 (23%), Positives = 81/213 (37%), Gaps = 9/213 (4%)
 Frame = +2

Query: 110 SNCIKHKTTIASSGVVRKSKMSEGGHLQQRSGGGKSLSKGSPSSLIGTLKKLLRSGKEVS 289
           S+     ++ +SS     S  S        S    S S  S SS          S    S
Sbjct: 351 SSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSS 410

Query: 290 ESGLRSSFGVDSGCNTPTSQPRAPWGTQSTSQSELEATTGLAGSLAPGKGGLASPTLSPF 469
            S   SS    S  ++ +S   +P  ++S+S S   +++  + S +      +S + SP 
Sbjct: 411 SSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPS 470

Query: 470 GGSGIKRLFEPKFRQQYHSGPLPSSISSCASKP------ISIANKALAHSISDPCDNPST 631
             S               S P PSS SS +S        I  ++K +  S +DP +NPS+
Sbjct: 471 SSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSPSIQPSSKPVDPSPADPSNNPSS 530

Query: 632 ---SSVGFDSSGSNAAWAIPAAPRSAASIVVGS 721
              SSV   S  S+ +   P+      ++  GS
Sbjct: 531 VNPSSVNPSSINSSPSIISPSVSTKTVTLSNGS 563

 Score = 41.2 bits (95), Expect = 0.021
 Identities = 42/183 (22%), Positives = 66/183 (35%)
 Frame = +2

Query: 140 ASSGVVRKSKMSEGGHLQQRSGGGKSLSKGSPSSLIGTLKKLLRSGKEVSESGLRSSFGV 319
           +SS     S  S        S    S S  S SS   +      S    S S   SS   
Sbjct: 332 SSSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSS 391

Query: 320 DSGCNTPTSQPRAPWGTQSTSQSELEATTGLAGSLAPGKGGLASPTLSPFGGSGIKRLFE 499
            S   +P+S   +   + S+S S   +++  + S +       SP+ S    S       
Sbjct: 392 SSSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSSSSS 451

Query: 500 PKFRQQYHSGPLPSSISSCASKPISIANKALAHSISDPCDNPSTSSVGFDSSGSNAAWAI 679
                   S    SS S  +S   S ++ + + S S    +PS+SS    SS S++    
Sbjct: 452 SSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSPSIQ 511

Query: 680 PAA 688
           P++
Sbjct: 512 PSS 514

 Score = 37.0 bits (84), Expect = 0.40
 Identities = 31/136 (22%), Positives = 56/136 (40%)
 Frame = +2

Query: 323 SGCNTPTSQPRAPWGTQSTSQSELEATTGLAGSLAPGKGGLASPTLSPFGGSGIKRLFEP 502
           S   +P+S   +   + S+S S   +++  + S +       SP+ S    S        
Sbjct: 334 SSSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSSSSSSSSSSSSSSSS 393

Query: 503 KFRQQYHSGPLPSSISSCASKPISIANKALAHSISDPCDNPSTSSVGFDSSGSNAAWAIP 682
                  S    SS SS +S   S ++ + + S S    +PS S     SS S+++ +  
Sbjct: 394 SSPSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPSRSSSSSSSSSSSSSSS 453

Query: 683 AAPRSAASIVVGSPPP 730
           ++  S++S    SP P
Sbjct: 454 SSSSSSSSSSSSSPSP 469

>ref|XP_214975.2| similar to Hypothetical zinc finger protein KIAA0211 [Rattus
           norvegicus]
          Length = 1407

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 45/166 (27%), Positives = 64/166 (38%), Gaps = 30/166 (18%)
 Frame = +2

Query: 77  RRLPQPAHWGLSNCIKHKTTIASSGVVRKSKMSEGGHLQQRSGGGKSLSKGSP------- 235
           R+  +PAH  LS+C+     + +  V   +K  + GH++  SG  K  SKGSP       
Sbjct: 269 RQRLKPAHSKLSSCVAALVALQAKRVANVTKEDQPGHIKDSSGPTKEGSKGSPKMPKSPK 328

Query: 236 ---SSLIGTLKKLLRSGKEVSESGLRSSFGVDS-GCNTPTSQPRAPWGTQSTSQSELE-- 397
              S L  T K +  S    S     SS G  S   ++P + P+    T  TS  E++  
Sbjct: 329 SPRSPLEATRKNIKPSDSPRSICSDSSSKGSPSVAASSPPAIPKVRIKTIKTSSGEIKRT 388

Query: 398 -----------------ATTGLAGSLAPGKGGLASPTLSPFGGSGI 484
                             T+    S  PG  G A P    F  +GI
Sbjct: 389 VTRVLPDPDDPSESPAGGTSAEVPSEVPGDEGSAMPVEEHFSEAGI 434

>ref|XP_133541.4| similar to Hypothetical zinc finger protein KIAA0211 [Mus musculus]
           gi|30520115|ref|NP_848822.1| RIKEN cDNA A730014M16 gene
           [Mus musculus] gi|26335253|dbj|BAC31327.1| unnamed
           protein product [Mus musculus]
          Length = 1217

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 47/170 (27%), Positives = 65/170 (37%), Gaps = 34/170 (20%)
 Frame = +2

Query: 77  RRLPQPAHWGLSNCIKHKTTIASSGVVRKSKMSEGGHLQQRSGGGKSLSKGSP------- 235
           R+  +PAH  LS+C+     + +  V   +K  + GH +  SG  K  SKGSP       
Sbjct: 224 RQRLKPAHSKLSSCVAALVALQAKRVANVTKEDQPGHTKDSSGPTKEGSKGSPKMPKSPK 283

Query: 236 ---SSLIGTLKKLLRSGKEVSESGLRSSFGVDS-GCNTPTSQPRAPWGTQSTSQSELE-- 397
              S L  T K +  S    S     SS G  S   ++P + P+    T  TS  E++  
Sbjct: 284 SPRSPLEATRKSIKPSDSPRSICSDSSSKGSPSVAASSPPAIPKVRIKTIKTSSGEIKRT 343

Query: 398 ---------------------ATTGLAGSLAPGKGGLASPTLSPFGGSGI 484
                                +T   A S APG  G A P    F  +GI
Sbjct: 344 VTRILPDPDDPSKSPAESPAGSTITEAPSEAPGDEGTAMPVEEHFSEAGI 393

>ref|NP_508292.1| putative protein family member (XC177) [Caenorhabditis elegans]
            gi|7505357|pir||T34434 hypothetical protein K06A9.1a -
            Caenorhabditis elegans gi|3834294|gb|AAC70890.1|
            Hypothetical protein K06A9.1b [Caenorhabditis elegans]
          Length = 2232

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 54/216 (25%), Positives = 80/216 (37%)
 Frame = +2

Query: 131  TTIASSGVVRKSKMSEGGHLQQRSGGGKSLSKGSPSSLIGTLKKLLRSGKEVSESGLRSS 310
            T   ++ V  +S +  G  L  +S      S  SPSSL  +   +     E S S  +SS
Sbjct: 656  TFSVATEVTSQSTVPSGSSLGTQSTN----SSPSPSSLSPSTSGMSTLTSEPSPSSTQSS 711

Query: 311  FGVDSGCNTPTSQPRAPWGTQSTSQSELEATTGLAGSLAPGKGGLASPTLSPFGGSGIKR 490
             G  S   TP+  P     +  +S S    ++G AG+        +S   S    S    
Sbjct: 712  -GAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAAS 770

Query: 491  LFEPKFRQQYHSGPLPSSISSCASKPISIANKALAHSISDPCDNPSTSSVGFDSSGSNAA 670
                +   Q  +    SS+S+ A+   S       +S       PST S G  SSGS   
Sbjct: 771  TTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPSTVS-GSTSSGSTVT 829

Query: 671  WAIPAAPRSAASIVVGSPPPVLRDGARFETRSEAAL 778
                 A  S +S+   SP P         T S +++
Sbjct: 830  VGSTEASTSGSSVASSSPAPSTSQNPNPSTSSGSSM 865



EST assemble image


clone accession position
1 CL23g02_r AV394487 1 556
2 LCL036g10_r AV628107 25 452
3 HCL046e11_r AV642156 327 836




Chlamydomonas reinhardtii
Kazusa DNA Research Institute